利用微衛星序列作為台灣落花生栽培種DNA分子標誌
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(2) ᆵक़்سഛጟ TTS ᑑ! 177. (Inter-SSR) ։ֱ࣫ऄΔբᆖפګᚨڇشᆵक़سᙊႚࣴฆ৫ေ۷ (Hopkins et al. 1999) Δࠡխ SSR ݧ٨ਢ ط1-6 ଡᨕഗૹᓤඈ٨ิګΔሙڇ܉ഗิڂխΔࠠڶऱڍীࢤֺࠏΕ٥᧩ࢤᑑΕ࣠ױ ᔾΕ։࣫୲࣐ᚌរΖKrishna Գ (2004) شܓ18 ଡᘛ٠ᑑࡳऱ SSR ֧։࣫ 48 ଡ Valencia ഗ ڂীऱᆵक़்سഛጟΔԫ٥ྒྷ 120 ଡլٵഗڂஆΔᆖመᦞףآጩᑇؓ݁ऄ (UPGMA) հႃᆢ։ ࣫Δ౨ജ։ 3 ଡᙊႚઌۿႃᆢΙMoretzsohn Գ (2004) ᙇ ش12 ଡ SSR ֧։࣫ 96 ଡᆵक़س ጟΰߓαፖ 36 ଡ२ᄭມسጟΔມسጟො።ฆᔆ᧯ A. monticola (AABB)ΕDD ഗ ิڂA. gladuliferaΕ13 ଡ AA ഗڶิڂᣂऱ 2 ᧯ (2n=20) Ε2 ଡ 2n=18 ֗א10 ଡ BB ഗิڂऱມسጟΔ ৬مᆵक़سጟΰߓαᆢႃΔ܂ױߛጟՂᘣءᙇᖗऱەΖڼ؆ΔSSR ഗڂஆ Ah-041 ࠡխ 292 bp ኙೝഗڂী AA ഗิڂጟΰߓαࢬڶΔ᧩ قSSR ᔞٽᆵक़سాᙊႚ᧢ฆऱઔߒΖ ႚอᖕ؆।ীኪऱᦸࡳΔழ࠹࣐ᛩቼైڂᐙΔޓᏺܑܒףՂհܺᣄΔ૿ኙኔᎾੌຏข ྤޓऄሒࠩᦸࡳؾऱΔᏁࠌݾהࠡشࣚ܌ംᠲΔDNA ਐె։࣫ਢਐࠠڶଡ᧯റԫࢤऱᙊႚ ิګ։࣫ (Jeffrey et al. 1985) Δլ࠹ࠩิ៣ຝۯΕ࿇ߛழཚፖᛩቼైڂᐙΔLevy Գ (1988) ଈ אڻM13 ᕸပ᧯ಮ܃ᓡਣ᧯ (minisatellite) ݧ٨Δشܓতֱᠧٽऄ৬ዌक़ΕՕຽΕ႓ߤΕᖪא ֗ਸᖪཬढढጟᗑ DNA ਐెΔࠀױፖࠡה೯ढࡉპسढࢬڶሶΔ ڇDNA ਐె։࣫شຜ ױ։ढጟዝ֏ࡉᙊႚቹᢜ৬ࠟمՕֱ૿Δץਔጟᦸࡳࡉഗ᧯ڂ։࣫ኔᎾᚨ( شStaub et al. 1999) Ζءઔߒಾኙࢬءഛߛᆵक़سጟል 6 ࡉ 7 ᇆ֗ࠡઌᣂᘣᄭ٥ 12 ଡጟΰߓαΔࠌ ش97 ଡ SSR ֧ิٽၞ۩։࣫Δࠡխ 77 ิᛧױ։࣫යΔ26 ิࠠڍڶীࢤׂΔ܂ױጟᦸࡳ ֗ߛጟޗறᙇᖗऱࠉەᖕΔਢഏփଈشܓڻറԫࢤ SSR ᑑ৬مᆵक़்سഛጟ DNA ਐెᇷறΖ. 㧟㠨咖㡈㽤 ֻྏՄफ़ݡֽ! ᧯ᆵक़்سഛጟ (2n = 40) ል 6 ᇆࡉል 7 ᇆ֗ࠡઌᣂᘣᒴΰቹ 1αል 5 ᇆΕত 10 ᇆΕত 11 ᇆΕত ߓޏ141ΕCJ444ΕNcAcc17127ΕPI 240553ΕPI 314817Εદक़۫֗אఄػ׃٥ 12 ଡጟΰߓαΰ। 1α Δ94 ࡉ 95 ڣཚ܂Δਊԫය்ٙጟ࣍ልᄐᇢ᧭ࢬᄵࡉضၴΖ ८ᅕපפᄃ̶!ژ ᆺׂ DNA ဇ࠷ֱऄᖕ Bornet ࡉ Branchard (2001) ऱ CTAB (cetyltrimethylammonium bromide) ֱऄၞ۩ΖSSR ։࣫Κ᜔࣍᧯ᗨ 20 ȝL ऱ֘ᚨයٙၞ۩Δ ܶץ100 ng ഗ ิڂDNAΕ10 mM Tris–HCl (pH 8.3)Ε50 mM KClΕ2 mM MgCl2Ε200 ȝM dNTPsΕ0.6U Taq polymeraseΕ0.25 ȝM SSR primerΕ 5% DMSO ֗א0.5 ȝg/ȝL BSAΔאፋٽ䇹ຑ᠙֘ᚨᕴ (MJ Research PTC-200) ၞ۩֘ᚨΔ֘ᚨᄵ৫ ەFerguson Գ (2004) ৬ᤜ࿓ݧΔၲࡨ 94к˃3 ։ᤪ৵Δၞ۩ 40 ༛ᛩऱ 94к˃45 ઞΕ55к˃45 ઞΕ 72к˃1 ։ᤪΔ່৵ 72к˃10 ։ΖࠉᖕছԳ࿇।հ SSR ֧ݧ٨Δਗᙇ֧យٽᄵ৫ 55-60кΔ PCR ឩᏺขढՕ՛ 500 bp אՀΔಾኙ 2 ۟ 4 ᨕഗ១ૹᓤݧ٨٥ 97 ิ SSR ֧ิ (He et al. 2003; Ferguson et al. 2004; Moretzsohn et al. 2005)Ζ ̈́ڧᇆညࡔᐂ! 20 ȝL ፋٽ䇹ຑ᠙֘ᚨᏺཷऱ DNA ขढΔףԵ 4 ȝL 6X ऱሽࣺᒷᓢΰ0.1% xylene cyanol ࡉ 30% glycerolα Δ א3% Agarose SFRTM ᇞ࣫৫ᡯᓄ (Amresco Co., USA) փܶ 0.5 ȝg/mL ᄽ֏Ԭᙍ (EtBr) ۥΔ ڇ1X TBE ᒷᓢ (89 mM Tris-borate, pH 8.0 ࡉ 2 mM EDTA) խၞ۩ሽࣺΔሽࣺය ٙ 150 V ၞ۩ 90 ։ᤪΔא؆ᗉܧቝ৵ધᙕሽࣺቹᢜΖ.
(3) ልᄐઔߒ! ร 56 ࠴! ร 3 ཚ. 178. ቹ 1. ᆵक़سል 6 ᇆࡉ 7 ᇆհᢜߓΖ Fig. 1. The pedigree of peanut Tainung No. 6 and No. 7.. । 1. ࠎᇢᆵक़( سArachis. hypogaeae) հጟΰߓαזᇆΕټጠཬ֗אढী Table 1. Code, cultivar name, plant botanical type and scientific name of subspecies and variety of peanuts used for SSR analysis No 1 2 3 4 5 6 7 8 9 10 11 12. Variety (line) Tainung No. 5ΰል 5 ᇆα Tainung No. 6ΰል 6 ᇆα Tainung No. 7ΰል 7 ᇆα Tainan No. 10ΰত 10 ᇆα Tainan No. 11ΰত 11 ᇆα Nan Kai-si 141ΰত ߓޏ141α CJ444 NC Acc 17127 PI 240553 PI 314817 Honghua 1ΰદक़α Spanish whiteΰ۫ఄػ׃α. Plant botanical type Spanish Spanish Spanish Spanish Spanish Spanish Spanish Virginia bunch Spanish Valencia Spanish Spanish. Subspecies & variety Fastigiata valgaris Fastigiata valgaris Fastigiata valgaris Fastigiata valgaris Fastigiata valgaris Fastigiata valgaris Fastigiata valgaris Hypogaea hypogaea Fastigiata valgaris Fastigiata Fastigiata Fastigiata valgaris Fastigiata valgaris.
(4) ᆵक़்سഛጟ TTS ᑑ! 179. TTS ૄЯळᏴത̈́ؠԔ! SSR ഗڂஆᙇཷ شܓpGEM-T Easy Vector System (Promega Co., USA) ᖕᐗ৬ᤜޡᨏΔ࠷ 3 ȝL PCR ขढףԵ 5 ȝL 2X rapid ligation bufferΕ3U T4 DNA ligase ֗א50 ng pGEM-T Easy VectorΔ ࡉ݁ڇᄵՀ֘ᚨ 1 ՛ழΔٵழ࠷ԫጥ ECOSTM ٚาઽΰ墿ݾسسΔα Δᖕᐗ৬ᤜ ޡᨏၞ۩᠏ীش܂Δٚาઽಯ٧৵ףԵ֘ᚨګݙऱ൷ٽᔆ᧯ᔼᛯ 1 ઞΔ್Ղ࣋Ե٧Ղ 2 ։ᤪΔܛ ݁ױჁ ܉LB / Amp (LB broth with 1.5% agar and 50 ppm ampicillin) ؓࣨഛ塄ഗΔ࣍ 37кਁᄵᒣ ଙᆜഛ塄 12 ՛ழאՂΔሶֲਗᙇۥػပᆵΔࡡಜंՓݾسֆၞ۩ᇞݧΔࢬݧ٨Ղႚ۟ SDSC Biology Workbench (http://workbench.sdsc.edu/) ጻీၞ۩ઌᣂֺኙ։࣫Ζ. 俟 㨫 ར܅Ϡ TTS ᇾᄫ̶!ژ אฤ֧ٽ९৫ 18~26 ᨕഗΕយٽᄵ৫ 55-60к ֗אPCR ឩᏺขढՕ՛ 500 bp אՀයٙհ 97 ิᆵक़ سSSR ֧Δኙ 12 ଡᇢ᧭ޗறၞ۩։࣫ΰ। 1αΔޢଡધᙕයᆖመ۟֟ 3 ૹڻᓤऱ SSR ։࣫Δᗴᙇױᛧ堚ཐයΕයᑇ֗ؾՕ՛ࠠڶࡳ٦ࢤऱ 77 ิ֧Δࠡխץਔ 28 ิಾኙ di-nucleotide ૹᓤݧ٨ΰga ૹᓤ ڶ17 ิα Ε38 ิಾኙ tri-nucleotide ૹᓤݧ٨ΰtaa ૹᓤ ڶ23 ิα Ε1 ิ tetra-nucleotideΰctca ૹᓤα ֗א9 යܶ ڶ2 ጟ repeat motif ऱૹᓤݧ٨Δႛ SSR ֧ PM-73 آ ࿆ሉૹᓤݧ٨ᣊীΰ। 2α ΰHe et al. 2003α Ζޢଡ SSR ֧ิױᛧ 1~3 ଡױᙃᢝයΰቹ 2α Δא SSR ֧ิ pPGSseq11E11, pPGPseq2G3, PM238, Ah-075, Ah-594 ྒྷ່ ڍ3 ଡයΔؓ݁ଖ 1.33 ය / S S R ֧ ิΰ 1 යΚ56 ิΔ2 යΚ15 ิΔ3 යΚ5 ิ αΔԫ٥ྒྷ 102 ଡය Δ SSR ᏺ ༏ ขढΰ යαՕ՛ঞտ࣍ 100 ۟ 445 bp հၴΰ। 2αΖ ޢଡ SSR ֧ิೠྒྷࠩ 1~6 ଡኙೝഗڂΔࠡխאഗڂஆ pPGPseq5D5 ࡉ PM36 ᨠྒྷ່ࠩڍ 6 ଡΰቹ 3αΔૠ ڶ26 ิࠠڍڶীࢤׂΔؓ݁ 1.7 ኙೝഗ ڂ/ S SR ഗڂஆΖ ڇ102 ଡᨠྒྷය᜔ ٥ ڶ33 ଡڍীࢤයપ᜔۾ᑇ 32%Ζڼ؆Δ ڶ13 ଡ SSR ֧ิྒྷጟറԫࢤයΰ। 3α Δ் ഛጟ PI 314817 ࡉ NCAcc17127 ։ܑᨠྒྷ່ ڍ5 ଡጟറԫࢤයΔࠡխ SSR ֧ิ pPGSseq9B4 ࡉ pPGSseq11G3 ٵױழܑࠟृፖࠡהᇢ᧭ޗறΰቹ 4α Δࠡڻ CJ444 ᨠྒྷ 4 ଡΔഏփߛګጟ ত 10 ᇆႛ࿇ԫଡറԫࢤයΰቹ 4α Δ܂ױጟᦸࡳەΔPI314817 ࡉ NCAcc17127 ᝫٵழ ٥ ڶ4 ଡ ፖ ࠡ ה ጟ ΰ ߓ α լ ٵհ ය (pPGSseq9A7, pPGSseq19E9, pPGSseq16F1, pPGSseq10D4)Ζ ར܅Ϡ TTS ԔЕ̶!ژ ءڇኔ᧭ऱ 77 ิ SSR ֧։࣫Δ࿇ຝٝයፖ He Գ (2003) ࡉ Moretzsohn Գ (2005) ऱ࣠ڶฆΔץਔ ڶ20 ิ֧ขسऱයᑇؾፖՕ՛ՂڶฆΔ؆Δ ڶ6 ิ SSR ֧ኙࠀآ ಖሉቃཚׂՕ՛ΰPM65, PM137, PM188, PM201, PM204, PM238α Δ࣍ਢಾኙຍࠟຝ։ڶฆऱ SSR ഗڂஆΔ։ܑਗᙇ 3 ଡ SSR ֧ิ֗ຝ։ PCR ขढڶฆऱᑌၞ۩ᇞݧΔشܓᄐ֏ pGEM-T Easy ཷ᧯ऴ൷ᙇཷ PCR ขढࠀ܂ᇞݧΰ। 4αΔ࣠ᆵक़ سSSR ֧ิ pPGSseq17G6 ᨠ ྒྷࠩ 2 ิઌฆයΔ։ܑ pPGSseq17G6a 275~296 bp ࡉ pPGSseq17G6b 236~241 bpΔڼ؆Δᒔᎁ ࠟጤݧ٨ፖᙇشऱറԫࢤ SSR ֧ݧ٨ઌฤΔࠀݧڇ٨խڶ࿇ٚ۶ࣔ᧩ऱ TTG motifΙ.
(5) ልᄐઔߒ! ร 56 ࠴! ร 3 ཚ. 180. । 2. ᆵक़ سSSR ։ᑑ։࣫հ֧֗ PCR ขढ Table 2. List of SSR primers used in 12 peanut cultivars, and the products of PCR amplification. Primer. Size (bp). Number of bands. No. of distinguishable patterns. Primer. Size (bp). Number of bands. No. of distinguishable patterns. SSR Motif. pPGSseq11E11. 186. 3. 2. pPGSseq13E6A. 252. 1. 1. ga. pPGSseq14F4. 163. 2. 1. taa. taa. pPGSseq15C12. 274. 2. 3. pPGSseq14E10. 151. 1. 1. taa. ttg. pPGSseq16F1. 271. 1. 3. taa. pPGSseq15B1. 116. 1. pPGSseq17G6. 249. 2. 1. taa. pPGSseq16G8. 194. 1. 2. taa. 5. ttg. pPGPseq2C11. 264. 1. 1. taa/cac. SSR Motif. pPGSseq18B8. 254. 2. 1. taa. pPGPseq3A1. 238. 1. 2. taa. pPGSseq18G10. 254. 1. 1. ttg. pPGPseq2G3. 215. 3. 1. taa. pPGSseq9A7. 280. 1. 3. taa. pPGSseq11G3. 224. 1. 3. ctt. pPGPseq3F1. 290. 1. 1. ctca. pPGSseq16F10. 298. 1. 1. ga. pPGPseq3E10. 276. 1. 1. taa. pPGSseq15D3. 289. 1. 2. ga. pPGPseq7H6. 300. 1. 1. ctt. pPGPseq5D5. 274. 2. 6. ga. pPGPseq3D9. 292. 1. 1. ga/gt. pPGSseq18C2. 139. 1. 1. at. pPGSseq9F1. 240. 1. 1. at. pPGPseq3A8. 152. 1. 1. taa. pPGSseq11H1. 162. 1. 1. ga. pPGPseq2G4. 289. 1. 2. taa. pPGSseq12E10. 288. 1. 1. taa. pPGSseq19D9. 271. 1. 3. taa taa. pPGSseq17E3. 193. 1. 1. ctt. pPGPseq2D12B. 265. 1. 3. pPGSseq18A5. 268. 1. 1. at/taa. pPGSseq15E12. 135. 1. 1. at. pPGSseq19E9. 255. 1. 2. taa. pPGSseq15E8. 298. 1. 1. taa. pPGSseq9B4. 254. 1. 3. ttg/taa. pPGSseq12B6. 238. 1. 1. cta. pPGPseq1B9. 282. 2. 1. ga. pPGSseq15F12. 281. 1. 2. ga. pPGSseq12F7. 290. 1. 1. taa. pPGSseq18G9. 225. 2. 1. taa. pPGSseq19F4. 283. 1. 1. ga. PM-53. 116. 1. 1. at. pPGPseq8E12. 198. 1. 3. ttg/taa. pPGPseq8D9. 132. 2. 3. ctt. pPGPseq2F5. 262. 1. 1. taa. PM-73. 100. 1. 1. pPGSseq18G1. 277. 2. 1. taa. PM-210. 179. 1. 3. ct. pPGPseq2E6. 250. 2. 4. ga. PM65. 210. 1. 1. ct. PM3. 200. 1. 1. ga. PM137. 150. 1. 1. ga. PM36. 190. 2. 6. ga. PM188. 100. 1. 1. ga. PM45. 100. 1. 1. ga. PM201. 223. 2. 1. ct. PM145. 170. 1. 1. ct/ca. PM204. 214. 1. 3. ga. PM183. 100. 1. 5. ct. PM238. 170. 3. 1. ct. PM200. 150. 1. 1. ct/ca. Ah-075. 149. 3. 1. aca. Ah-041. 266. 1. 1. ctc/aac. Ah-325. 230. 1. 1. ttg. Ah-193. 445. 1. 1. aac/ga. Ah-594. 184. 3. 1. aac. Ah-558. 233. 2. 1. ttg. Ah-638. 268. 1. 1. aac. Ah 4-26. 150. 2. 3. ct. Ah-649. 220. 2. 1. aac. PM-15. 177. 1. 1. ga. Ah-715. 112. 1. 1. aac. PM-32. 103. 1. 1. ct.
(6) ᆵक़்سഛጟ TTS ᑑ! 181. ቹ 2. ᆵक़( אسa). Ah-638Ε(b). Ah-649 ( ֗אc). Ah-594 ֧ឩᏺհ SSR ቹᢜΔޢଡ SSR ֧ิ։ܑྒྷ 1-3 ଡයΖΰ1~12 ᆵक़سጟזᇆΔᇡߠ। 1α Fig. 2. Amplification profiles of 12 cultivars (lines) of peanut using (a). Ah-638, (b). Ah-649, and (c). Ah-594 as SSR primers revealed 1-3 fragments. (Line numbers at top refer to the number in Table1. M=100 bp DNA ladder)..
(7) 182. ልᄐઔߒ! ร 56 ࠴! ร 3 ཚ. ቹ 3. ( אa). PM36 ࡉ (b). pPGPseq5D5 ֧հ 12 ଡᆵक़ سSSR ڍীࢤቹᢜΖΰ1~12 ᆵक़سጟזᇆΔ ᇡߠ। 1α Fig. 3. The polymorphic SSR patterns of 12 cultivars (lines) of peanut obtained using primers PM36 and pPGPseq5D5. (Line numbers at top refer to the number in Table 1. M= 100 bp DNA ladder).. । 3. ᦸܑᆵक़سጟΰߓαհ SSR ֧ Table 3. SSR primers for differentiating peanut cultivars Cultivar Tainan No.10 CJ444 NC Acc 17127 PI 314817. Primer revealing specific fragments pPGPseq2D12B pPGSseq18A5, pPGSseq13A10, pPGSseq16G8, pPGPseq5D5 pPGSseq11E11, pPGSseq9B4, pPGSseq11G3, PM36, Ah 4-26 pPGSseq9B4, pPGSseq11G3, pPGSseq15D3, pPGPseq8D9, PM-210.
(8) ᆵक़்سഛጟ TTS ᑑ! 183. ቹ 4. ᦸܑᆵक़سጟհ SSR ᑑΔ( אa). pPGPseq2D12B ࡉ (b). pPGSseq11G3 ֧ױ։ܑᦸܑত 10 ᇆΕNCAcc17127 ֗אPI314817Ζΰ1~12 ᆵक़سጟזᇆΔᇡߠ। 1α Fig. 4. SSR markers for identification of peanut cultivars Tainan No. 10, NCAcc17127, and PI314817 obtained using primers (a). pPGPseq2D12B and (b). pPGSseq11G3, respectively. (Line numbers at top refer to the number in Table 1. M= 100 bp DNA ladder). । 4. ഏփᆵक़்سഛጟ SSR ֧ݧ٨ΕׂՕ՛Εૹᓤݧ٨ᣊী֗אᇞݧᑌ Table 4. Characterization of SSR loci in Taiwan cultivated peanut primer pairs, fragment size, repeat motif, and sequenced samples SSR locus pPGSseq17G6a pPGSseq17G6b pPGSseq9F1 PM-32 PM188 PM201a PM201b PM204. Primer pairs (5’ĺ3’) AACGACAACGACAACGACAA TCCACTATACAGTTGGGGGC GCCTAGTGTGCAAAGGTGCT CACCTGATGTGTAGTGAGGCA AGTGTTGGGTGTGAAAGTGG GGGACTGGGAACAGTGTTTATC GGGCTTCACTGCTTTTGATT TGCGACTTCTGAGAGGACAA CCTTTATAGAGGACCTTCCCTCTC GCCTATTTGGTATCGGCTCA. TGGGCCTAAACCCAACCTAT CCACAAACAGTGCAGCAATC z Variety numbers refer to the number in Table1.. Size (bp) 296/288/276/275. Repeat motif/ similar loci Ah-371. Varietyz 2, 3, 6, 7, 10. 241/236 240. Ah-371 (AT) 5. 2, 5, 10. 103. (CT)8(CT/G)(CT)7. 3, 8, 10. 100/102. (GA)7/6. 3, 4, 10. 223/225. (CT)19/20. 2, 5, 10. 138 224/220/218/214. PM201/PM347a (GA)24/22/21/19. 1, 3, 9, 10.
(9) 184. ልᄐઔߒ! ร 56 ࠴! ร 3 ཚ. pPGSseq9F1 ቃཚขढՕ՛ 296 bp ᥆࣍ AT ᠨᨕഗૹᓤΔ࣠ڇᇢጟΰߓαᨠྒྷଖ 240 bp ࠀ ࿇ (AT) 5 ऱૹᓤݧ٨ΙPM-32 ቃཚขढՕ՛ 90 bpΔᆖመᇞݧ৵ᒔᎁܶ( ڶCT) 16 motif ࠀ ڇլٵߓխ࿇ԫଡுᎨڍীࢤ (single nucleotide polymorphism, SNP)ΙPM188 ᆖᇞݧ৵व ขढՕ՛ 100/102 bpΔլٵᇢޗறႛઌԫଡ GA ૹᓤݧ٨ΙPM201 ขढ᥆࣍ CT ᠨᨕഗૹᓤΔ Ոਢ࿇ࠟิයขࠡسԫಖሉ PM201aΔයՕ՛ਢ 223 ࡉ 225 bpΔլٵᑌၴઌԫଡ CT motifΔԫಖሉ PM201b 138 bp ࠀآ࿇᧩ࣔڶऱૹᓤݧ٨ΙPM204 ขढ᥆࣍ GA ᠨᨕഗૹ ᓤΔᇞݧՕ՛ 214/218/220/224 ࿇ ڶ4 ଡኙೝഗ( ڂGA) 24/22/21/19ΰቹ 5α Δኙೝഗڂᑇؾ ࣍ऴ൷ᨠྒྷሽࣺቹᢜΖ. 岝 嵥 ءኔ᧭ԫ٥ᗴᙇ נ77 ิ SSR ֧ၞ۩։࣫ΰ। 2αΔࠡխ א23 ิಾኙ taa ૹᓤݧ٨່ڍΔࠡ ڻ 17 ิ ga ૹᓤݧ٨Δٵழ tri-nucleotide ૹᓤݧ٨ᑇؾ࣍ di-nucleotideΔ ڇFerguson Գ(2004) ᆵक़ سSSR ݧ٨։࣫խਐנΔࢬڶ։ᠦᦸࡳऱ 110 ଡᆵक़ سSSR ݧ٨ אtaa (29%) ፖ ga (28%) ૹ ᓤݧ٨ֺࠏ່Ιڼ؆ΔMoretzsohn Գ (2005) شܓEST ᇷறေ۷ᆵक़سഗิڂխ tri-nucleotide ૹᓤݧ٨۾٤᧯ 73.2%Δdi-Εtera- ֗אpenta-nucleotide ૹᓤݧ٨։ܑ 22.2%Ε3.3% ֗א1.3%Δ ᧩ءقኔ᧭֧ऱᙇᖗՕીฤٽᆵक़سഗิڂऱࢤΖۖޢଡ SSR ֧ᨠྒྷࠩ 1-3 ଡයΔፖഏ ؆ᆵक़்سഛጟؓ݁ 1~3.02 ઌ२ (Krishna et al. 2004)Δ܀ਢࡉ٣ছ႓Գ (2001) ֽشܓᒟࡉۏد ऱ SSR ֧։࣫ᆵक़سጟၴᠧٌጟΔ࣠ᨠྒྷࠩ 4~11 ଡය᧩ࣔڶᆵΔױ౨ऱڂਢ࣍طᆵक़ ்سഛጟਢฆᔆ᧯Δֽאڼڂᒟ֗ ۏدSSR ֧ೠྒྷࠩᆵक़سլٵഗૹิڂᓤऱ SSR ഗڂ ஆΖۖءኔ᧭ආشऱᆵक़ سSSR ֧ڍᑇਢૹشܓᓤݧ٨܂ᠧٽ൶ಾΔ۞ഗڂխϘ࠷ϙࠠ ૹڶᓤݧ٨ऱཷߓΔᆖመᇞ֧ࡉݧૠመ࿓Δࠀඈೈૹᓤऱݧ٨ΔࢬאറԫࢤለΰMoretzsohn et al. 2004αΖ. ቹ 5. ᆵक़ سSSR ഗڂஆ PM204 ݧڍ٨ֺኙ։࣫Ζ Fig. 5. Multiple sequence alignment of peanut SSR locus PM204. The primer position is indicated by arrowhead, GA motif region by underline, and mismatch by dashed-line. TN5: Tainung No. 5, TN7: Tainung No.7..
(10) ᆵक़்سഛጟ TTS ᑑ! 185. ؾছբֆ܉၌መ 400 ଡक़ سSSR ഗڂஆΔޢଡ SSR ഗڂஆऱؓ݁ኙೝഗڂᑇؾտ࣍ 4.25-6.9 (He et al. 2003, Krishna et al. 2004) Δءኔ᧭ྒྷᑇᖕ 1.74 ኙೝഗ ڂ/ SSR ഗڂஆᑇ݁ؓ࣍܅ؾଖΔ ױ౨ऱᇞᤩਢߛڇጟመ࿓խڂૹࠌ֟شᑇऱᚌߜᘣءΔᖄીᆵक़்سഛጟհᙊႚ᧢ฆ՛Δ ڕSpanishWhite ٵழਢል 4Ε5Ε6 ᇆऱᘣ( ءHuang et al. 1996)Δᖄીኙೝഗڂᑇؾऱ྇֟Δڇ ՛ຽ்ഛጟᙊႚ᧢ฆऱઔߒխՈ࿇ઌۿऱൣݮΔԳऱߛጟᙇࢸທګऱᙊႚࣴฆऱ྇֟Δֺ֧ ጟᖄԵᄅऱഗڂীऱຒ৫ࠐऱ( ݶRoussel et al. 2005) Δڼ؆Δءኔ᧭ᙇ ش3% Agarose SFRTM ᡯᓄ ܂ SSR ഗڂஆሽࣺ։࣫Δլᓵڇᓄ᧯ໂ፹ፖۥՂࠠڶᖙ܂១ঁऱᚌរ (Huang et al. 1996)Δ܀ ਢᇞ࣫৫ࡉᨋඕ৫ለشܓႚอ 6%ፋׇ㋝ᓄ᧯Δທګᨠྒྷऱኙೝഗڂᑇؾೣ܅ΔSSR ഗڂஆᇞ ݧᇷறՈᢞኔኙೝഗڂऱᑇ܅ࠩ࠹ؾ۷Ζڼ؆Δ ڶ20 ิ֧ऱឩᏺขढྤऄ壄ᒔᦸܑΔܶץขس լറԫऱ PCR ขढΔࢨਢآ౨ᛧ堚ཐऱ࣠Δױ౨ऱ֧ڶڂૠլߜΔທ ګPCR ֘ᚨ֧ យٽயլࠋΔຝٝऱྤயኙೝഗ( ڂnull allele) ۟ױ౨ਢጟΰߓαᐛΔ܀սྤऄݙ٤ඈೈ ਢመ࿓խԳऱኔ᧭ᎄΖ ءኔ᧭խڍীࢤ֧ิࡉڍীࢤයᑇؾપ۾ᖞ᧯ 32%Δઌ२࣍ഏ؆்ഛጟक़ سSSR ઔߒऱ ࣠ (34%) ΔለૃԳ (1999) אRAPD ։࣫ᆵक़سጟऱ֧ڍীࢤֺ 5.5%֗යڍী ࢤֺ 9.9% נ3 אՂΔ᧩قઌለ࣍ RAPD ֟྇אױኔ᧭ᑇۖؾሒࠩઌٵऱய࣠Δٵழ SSR ᑑ լᓵױڇᔾࢤ٦ࢤՈࣔ᧩ᚌ࣍ RAPDΔڼڂᔞ܂ٽᆵक़سᙊႚ᧢ฆհઔߒΖ்ഛጟᆵक़س։ 2 ࠅጟ Arachis hypogaeae spp. hypogaea ֗ Arachis hypogaeae spp. FastigiataΔࠉࠡཬढীኪ٥ױ ։ SpanishΕValenciaΕVirginia bunchΕVirginia runner ীΔૃԳ (1999) א11 ଡ RAPD ֧ ։࣫ 30 ଡഏփᆵक़்سഛጟΰߓα Δឈྥאױ։լٵऱߛጟߓอ֗آፖऱഏ؆֧ጟޗறΔ܀ ਢٵԫߛጟߓอփլཬٵढীޗறথᆵڇઌٵ։ᆢΔءኔ᧭ࢬࠌشᆵक़سል 6 ᇆࡉ 7 ᇆ֗ઌᣂᘣ ᒴ٥ 12 ଡጟΰߓα ΔೈԱ Virginia bunch ཬढী NCAcc17127 ࡉ Valencia ཬढী PI314817 ࠡ塒ຟ ਢ Spanish ཬढীΔࠀ ڶٺृࠟ5 ଡጟറԫࢤයΔ֗ 4 ଡ٥ຏऱڍীࢤයΔ։ܑאױፖ ል 6 ᇆࡉ 7 ᇆ֗ࠡ ה8 ଡ Spanish ཬढীऱߛጟߓอܑΔ᧩قઌለ࣍ RAPD ᑑΔSSR ᑑޓᔞ ்ٽഛጟᆵक़سጟጥհᚨشΖ ءኔ᧭࿇ 26 ଡ SSR ഗڂஆऱەᇷறլᏘ٤ࢨਢፖኔ᧭ᨠྒྷ࣠᧩ࣔڶऱנԵ (He et al. 2003, Moretzsohn et al. 2005)Δࢬאਗᙇ 6 ଡᆵक़ سSSR ഗڂஆࠀಾኙຝ։ऱᇢጟΰߓαၞ۩ ᇞݧ։࣫Δ࣠࿇ऱᒔፖᇷறڶլઌฤհΔpPGSseq17G6 ٵழೠྒྷࠩ 2 ଡයΔࠡխ pPGSseq17G6a լٵጟΰߓαऱฆለՕΔ٣۩ᒔᎁ PCR ขढࠟጤऱݧ٨ፖەᇷறԫીΔඈೈ ֧ݧ٨ᙑᎄऱױ౨ࢤΔል 6 ᇆ pPGSseq17G6a ݧ٨ፖᇷறᆵक़ سSSR ഗڂஆ Ah-371 ઌۿΔ pPGSseq17G6b Ոٵᑌآ࿇ಖሉऱ TTG motifΔ᧩قຍԫݧ٨ֺڶለՕऱ᧢֏Δױ౨ਢڂᆵक़ ்سഛጟਢฆᔆ᧯Δࢬ אSSR ֧ᏺᘿഗิڂխઌ܀ۿլઌؾ࣍ٵᑑ SSR ۯᆜΙpPGSseq9F1 ഗڂஆቃཚขढՕ՛ 296 bpΔۖഏփᆵक़்سഛጟᨠྒྷࠩ 240 bp ׂΔݧ٨խᒔኔ ڶSSR (AT)5 motifΔຍᑌऱฆᚨᇠਢጟࢤऱᣂএΔছԳઔߒխਐڶנ။ڍऱૹᓤᑇΔڍীࢤऱ࿓ ৫ՈለΔۖᆵक़ سAT motif ່ڶऱؓ݁ 19.5 ଡૹᓤᑇ (Ferguson et al. 2004)ΙPM-32 ഗڂஆ ࠀآಖሉݧ٨ૹᓤ motif ᣊীΔᆖመᙇཷᇞݧ৵ᒔࡳ᥆࣍ CT motifΔ ڇPI314817 ߓݧ٨խ࿇ ԫுᎨ᧢ฆ (SNP) ਢ່՛ऱݧ٨ฆΔࠀྤऄشܓཏຏሽࣺ։࣫࿇ڼᣊڍীࢤ᧢ฆΔႊ៶ط ࡳऱுᎨփ֊䇹 ڕCel I ऱش܂Δթ౨ڇႚอሽࣺ։࣫խ᧩נقฆΙ֧ PM188 ឩᏺขढᇞݧ वයՕ՛։ܑਢ 100 ࡉ 102 bpΔլٵኙೝഗڂႛઌ 2 bpΔլ୲࣐شܓᡯᓄሽࣺנބฆΙ֧ PM201 ٵழྒྷࠩࠟଡڍীࢤයΔ։ܑ אPM201a ࡉ PM201b ।قΔࠡխ PM201b ऱݧ٨آ࿇.
(11) ልᄐઔߒ! ร 56 ࠴! ร 3 ཚ. 186. CT motifΔࠟጤݧ٨ઌ࣍ۿᆵक़ سSSR ഗڂஆ PM201 ࡉ PM347aΔ࣍طპᓡਣݧ٨Օၦሙڇ܉ഗ ิڂխΔױ౨ਢዝ֏መ࿓խಯ֏ໜ؈ૹᓤݧ٨ΙPM204 ഗڂஆଡᇞݧऱᑌڶլٵऱኙೝഗ ڂΔࠀڇآᇞ࣫ᡯᓄሽࣺխ࿇ฆΔឈྥᡯᓄሽࣺאױ១֏։࣫መ࿓Δݶף։࣫யΔ܀ਢڂ ܅૾ڼԱයऱᇞ࣫৫Δᖞ᧯ۖߢ SSR ։࣫ᚨᖕլٵऱኔ᧭Ꮑޣᙇᖗٽᔞऱ PCR ขढ։ֱ࣫ ڤΖءኔ᧭࿇்ഛጟᆵक़ سSSR ᑑխڶژڍᙊႚ᧢ฆΔץਔ؈Εૹᓤڻᑇฆ ֗אSNPΔ ለ RPAD ֗ ISSR ᑑޓᔞٽᆵक़سᙊႚ᧢ฆઔߒΔ㯍ၞԫޡၲ࿇شܓΔ܀រਢ SSR ։࣫ءګ ΔૻࠫᚨشऱཏሙࢤΖᆵक़்سഛጟऱᙊႚ᧢ฆ՛Δ࣐֧࿇ᙊႚஇࢤऱംᠲΔਚ२ᒴມ سጟ֧ၞ࣍ܗڶឩՕ᧢ฆ֗क़س㠩ఐፖᆺཌఐࢤݼጟऱ( شܓHung et al. 1999)Δױਢ DNA ᐋڻ ऱ᧢ฆઌኙ܅ᆵΔԱሒࠩߛጟፖጟጥؾऱΔᏁ৬مᄅऱᙊႚ։࣫ߓอΔءኔ᧭ਢഏփଈڻ ආشᆵक़ سSSR ᑑΔ৬مᆵक़ૹسᓤݧ٨։࣫ੌ࿓Δޡॣګݙऱ DNA ਐెᇷறΔࠀ᧩ قSSR ᑑ܂ױጟጥፖጟᦸࡳΙࠀಾኙᆵक़ڍسীࢤհૹᓤݧ٨ၞ۩ᦸࡳፖ༴૪Δݦඨലࠐ౨ ࣍شܓᆵक़سᙊႚቹᢜ৬مΕ։ᑑ᎖ߛܗጟΕࢤݼഗڂᙇཷ֗אढጟփዝ֏ᣂএ৬مشຜΖ. ㆤ䞷㠖䘊 (Literature cited) Bornet, B., and M. Branchard. 2001. Nonanchored Inter Simple Sequence Repeat (ISSR) Markers: Reproducible and specific tools for genome fingerprinting. Plant Mol. Biol. Rep. 19:209-215. Fan, M. J., S. F. Lo, J. Y. Wang, T. R. Shu, W. L. Tsaus, K. H. Yang, and Y. S. Cheng. 1999. Studies on the genetic relationship of peanut germplasm in Taiwan. J. Agric. Res. China 48:67-85. (in Chinese with English abstract) Ferguson, M. E., M. D. Burow, S. R. Schulze, P. J. Bramel, A. H. Paterson, S. Kresovich, and S. Mitchell. 2004. Microsatellite identification and characterization in peanut (A. hypogaea L.). Theor. Appl. Genet. 108:1064-1070. He, G. R. Meng, M. Newman, G. Gao, R. N. Pittman, and C. S. Prakash. 2003. Microsatellites as DNA markers in cultivated peanut (Arachis hypogaea L.) BMC Plant Biol. 3:3. Hopkins, M. S., A. M. Casa, T. Wang, S. E. Mitchell, R. E. Dean, G. D. Kochert, and S. Kresovich. 1999. Discovery and characterization of polymorphic simple sequence repeats (SSRs) in peanut. Crop Sci. 39:1243-1247. Huang, H. J., W. L. Tsaus, K. H. Yang, and J. N. Tsai. 1996. Evaluation of agronomic characteristics for the introduced wild peanut. J. Agric. Res. China 45:15-25. (in Chinese with English abstract) Huang, H. J., W. L. Tsaus, S. F. Lin, J. S. Hsieh, and J. N. Tsai. 1999. Identification and characteristic analysis of interspecific hybrids of peanut. J. Agric. Res. China 48:40-51. (in Chinese with English abstract) Huang, H. J., S. F. Lin, and J. S. Hsieh. 2001. Identification of the inconsistence between genomic constitution and phenotypic variation in interspecific hybrids (4x Ø 2x) of peanut with DNA marker. 2001. J. Agric. Res. China 50:12-24. (in Chinese with English abstract) Jeffreys, A. J., V. Wilson, and S. L. Thien. 1985. Individual-specific “fingerprinting” of human DNA. Nature 316:76-79..
(12) ᆵक़்سഛጟ TTS ᑑ! 187. Krishna, G. K., J. Zhang, M. Burow, R. N. Pittman, S. G. Delikostadinov, Y. Lu, and N. Puppala. 2004. Genetic diversity analysis in Valencia peanut (Arachis hypogaea L.) using microsatellilte markers. Cell. Mol. Biol. Lett. 9:685-697. Moretzsohn Mde C., M. S. Hopkins, S. E. Mitchell, S. Kresovich, J. F. Valls, and M. E. Ferreira. 2004. Genetic diversity of peanut (Arachis hypogaea L.) and its wild relatives based on the analysis of hypervariable regions of the genome. BMC Plant Biol. 14:4-11. Moretzsohn Mde C., L. Leoi, K. Proite, P. M. Guimaraes, S. C. M. Leal-Bertioli, Ma. A. Gimenes, W. S. Martins, J. F. M. Valls, D. Grattapaglia, and D. J. Bertioli. 2005. A Microsatellite-based, gene-rich linkage map for the AA genome of Arachis (Fabaceae). Theor. Appl. Genet. 111:1060-1071. Roussel, V., L. Leisova, F. Exbrayat, Z. Stehno, and F. Balfourier. 2005. SSR allelic diversity changes in 480 European bread wheat varieties released from 1840 to 2000. Theor. Appl. Genet. 111:162-170. Staub, J. E., and F. C. Serquen. 1996. Genetic markers, map construction, and their application in plant breeding. Hortic. Sci. 31:729-739..
(13) 188. ልᄐઔߒ! ร 56 ࠴! ร 3 ཚ. Microsatellites as DNA Markers in Taiwan Cultivated Peanut1 Jen-Ren Chen2, Kin-Hsing Yang3, Tung-Hai Tseng3, Toong-Long Jeng3 and Min-Tze Wu2,4 Abstract Chen, J. R., K. H. Yang, T. H. Tseng, T. L. Jeng, and M. T. Wu. 2007. Microsatellites as DNA markers in Taiwan cultivated peanut. J. Taiwan Agric. Res. 56:176-188. The objectives of this work were to establish simple sequence repeat (SSR) DNA fingerprinting database and characterized SSR polymorphism in local peanut cultivars (Arachis hypogaea L.). In this investigation, 12 peanut cultivars were analyzed by using 97 SSR primer pairs. Seventy-seven SSR markers showed clear patterns and a total of 102 bands were recorded. Twenty-six SSR loci revealed polymorphism 13 of them were specific for cultivar identification. The average number of alleles per locus was 1.74, and up to 6 alleles were found at one locus. Six SSR loci in tested cultivars were sequenced for allele identification. The results indicated that different type of variation in SSR loci, including single nucleotide polymorphism (SNP), tandem repeat numbers, and non-repeat sequence locus. The results revealed that SSR markers produced a higher level of DNA polymorphism than other DNA markers in cultivated peanuts. Key words: Cultivated peanut (Arachis hypogaea L.), Molecular marker, Simple sequence repeat (SSR).. 1. Contribution No. 2293 from Agricultural Research Institute, Council of Agriculture. Accepted:August 5, 2007. 2. Respectively, Research Assistant ,Researcher and Senior researcher and Head of Biotechnology Division, ARI, Wufeng, Taichung, Taiwan, ROC. 3. Researcher, Crop Division, ARI, Wufeng, Taichung, Taiwan, ROC. 4. Corresponding auther, e-mail:[email protected]; Fax:(04)23302806..
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This project aims to cover a range of learning targets and objectives in the Knowledge, Interpersonal and Experience Strands/Dimensions, language development strategies and
The objectives of this Distinguished Project is to incorporate various efforts regarding assessment aspects in both Construction Engineering and Industrial Enginnering fields to