3D Scatter Plot for 2 Fold Expression change genes.

圖 6 實驗組 對照組（DADS/DMSO）的基因點狀立體散布圖.

3D Scatter Plot for all genes.

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100 1000 10000

0.01 0.1 1 10

X: Medicine (control) Y: Medicine (raw)

圖 7 實驗組 對照組（DADS/DMSO）的高表現基因點狀立體散布圖.

3D Scatter Plot for 2 Fold Expression change genes.

Selected Gene List: all genes (7440)

X-axis: user custom Experiment (Default Inte...

Y-axis: user custom Experiment (Default Inte...

Z-axis: user custom Experiment (Default Interpretatio...

Colored by: user custom Experiment (Default Interpretatio...

Gene List: all genes (7440) 1

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1000

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100000 0.1

1 10 100 1000 10000

0.01 0.1 1

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X: Medicine (control) Y: Medicine (raw)

Z: Medicine (ratio)

試驗規劃設計

晶片使用 晶片操作 Sample Labeling

Cy3: Control (DMSO) Cy5: Treatment (DADS)

Ratio=控制(Treatment)/對照(Control) Cy5/Cy3 百恩諾代客操作

HU1201

Cy5: Treatment (DADS)

Cy3: Control (DMSO)

Ratio: Treatment/Control

0.1 1 10

0.1 1 10

圖 8 實驗組 對照組 經標準化取對數值的基因柱狀頻率圖.

Histogram for all genes normalized log ratio.

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2 3 4 5 6 7 8 9 20 30 40 50

圖 9 實驗組 對照組 經標準化取對數值的上調基因柱狀頻率圖.

Histogram for up regulation in 2 fold expression change genes.

Frequency (# of Gene)

Log Ratio

0.1

0.03 0.04 0.05 0.06 0.07 0.08 0.09 0.2 0.3 0.4 0.5

0.1

0.03 0.04 0.05 0.06 0.07 0.08 0.09 0.2 0.3 0.4 0.5

圖 10 實驗組 對照組 經標準化取對數值的下調基因柱狀頻率圖.

Histogram for down regulation in 2 fold expression change genes.

1 10 100 1000 10000 100000

Medicine (control) 0.1

1 10 100 1000 10000

Medicine (control)

圖 11 實驗組 對照組（DADS/DMSO）的基因點狀平面散布圖.

Scatter Plot for all genes.

2 Fold Down Regulation 2 Fold Up Regulation

1 10 100 1000 10000 100000 Medicine (control) 0.1

1 10 100 1000 10000

Medicine (control)

圖 12 實驗組 對照組（DADS/DMSO）的高表現基因點狀平面散布圖.

Scatter Plot for 2 fold expression change genes.

1 10 100 1000 10000 100000

Medicine (control) 0.1

1 10 100 1000 10000

Medicine (control)

圖 13 實驗組 對照組 標示良好的高表現基因點狀平面散布圖.

Scatter Plot for flag A in 2 fold expression change genes.