• 沒有找到結果。

The pachytene chromosomes of maize as revealed by fluorescence in situ hybridization with repetitive DNA sequences

N/A
N/A
Protected

Academic year: 2021

Share "The pachytene chromosomes of maize as revealed by fluorescence in situ hybridization with repetitive DNA sequences"

Copied!
7
0
0

加載中.... (立即查看全文)

全文

(1)

Abstract A repetitive DNA sequence, ZmCR2.6c, was isolated from maize based on centromeric sequence CCS1 of the wild grass Brachypodium sylvaticum. ZmCR2.6c is 309 bp in length and shares 65% homology to bases 421–721 of the sorghum centromeric sequence pSau3A9. Fluorescence in situ hybridization (FISH) lo-calized ZmCR2.6c to the primary constrictions of pachy-tene bivalents and to the stretched regions of MI/AI chromosomes, indicating that ZmCR2.6c is an important part of the centromere. Based on measurements of chro-mosome lengths and the positions of FISH signals of several cells, a pachytene karyotype was constructed for maize inbred line KYS. The karyotype agrees well with those derived from traditional analyses. Four classes of tandemly repeated sequences were mapped to the karyo-type by FISH. Repeats 180 bp long are present in cyto-logically detectable knobs on 5L, 6S, 6L, 7L, and 9S, as well as at the termini and in the interstitial regions of many chromosomes not reported previously. A most in-teresting finding is the presence of 180-bp repeats in the NOR-secondary constriction. TR-1 elements co-exist with 180-bp repeats in the knob on 6S and form alone a small cluster in 4L. 26S and 5S rRNA genes are located in the NOR and at 2L.88, respectively. The combination of chromosome length, centromere position, and distri-bution of the tandem repeats allows all chromosomes to be identified unambiguously. The results presented form an important basis for using FISH for physical mapping and for investigating genome organization in maize.

Key words Zea mays · Pachytene chromosome · Karyotype · Repetitive DNA sequence · Fluorescence in situ hybridization

Introduction

Fluorescence in situ hybridization (FISH) is a most direct approach for physically mapping cloned genes and DNA fragments. In humans, single-copy sequences as small as 0.9 kb in length have been mapped, and two sequences separated by not more than 1 Mb have been ordered on mitotic metaphase chromosomes by FISH (Viegas-Péquignot et al. 1991; Trask et al. 1991). In plants, however, the sensitivity and resolution of metaphase FISH have been low because of difficulties in chromosome preparation and the pronounced con-densation of metaphase chromosomes (Jiang and Gill 1994).

Recently, several groups of investigators discussed the advantages of using meiotic pachytene chromosomes for physical mapping in plants (Xu and Earle 1996a,b; Zhong et al. 1996a,b; Armstrong et al. 1998; Chen et al. 1998; Fransz et al. 1998). First, pachytene chromosomes are more extended and possess many landmarks not rec-ognizable in mitotic metaphase chromosomes. Second, the walls of pollen mother cells (PMCs) can easily be broken by enzyme treatment, thus facilitating chromo-some spreading and probe penetration. Third, the devel-opmental stage of PMCs in an anther, or in anthers of a flower bud, is synchronous. Once the right stage is found, there will be sufficient material for analysis. Fourth, a pachytene bivalent consists of two homolo-gous chromosomes, so hybridization signals on pachy-tene chromosomes should be stronger than those on un-paired somatic chromosomes.

Among the many economically important plants, maize is one of the most suitable materials for develop-ment of a physical map by FISH. The pachytene chro-mosomes of maize can be obtained and identified easily by the acetocarmine squash technique (Dempsey 1994) and have been widely used for cytogenetic analysis Communicated by B.S. Gill

C.C. Chen (

) · F.C. Hsu · C.J. Wang · J.T. Yang · Y.Y. Kao Department of Botany, National Taiwan University, Taipei, Taiwan, Republic of China

e-mail: chencc@ccms.ntu.edu.tw Fax: +886-2-2391-8940

C.M. Chen

Institute of Botany, Academia Sinica, Taipei, Taiwan, Republic of China

O R I G I N A L A R T I C L E

C.C. Chen · C.M. Chen · F.C. Hsu · C.J. Wang J.T. Yang · Y.Y. Kao

The pachytene chromosomes of maize as revealed by fluorescence

in situ hybridization with repetitive DNA sequences

(2)

(Carlson 1988). Other advantages of maize are the avail-ability of genetic maps based on phenotypic and molecu-lar markers (Neuffer et al. 1997) and the availability of an YAC library (Edwards et al. 1992).

The most useful landmark for chromosome identifica-tion is the centromere. Unfortunately, the centromeres of maize pachytene chromosomes are not easily recognized when stained with fluorochromes such as propidium io-dide (PI) and 4, 6-diamidine-2-phenylindole dihydro-chloride (DAPI). This is particularly true for the cent-romeres of chromosomes 1, 3, 4, 5, 6, and 8. A break-through occurred when centromeric sequences of several cereal species were isolated and characterized (Aragón-Alcaide et al. 1996; Jiang et al. 1996; Dong et al. 1998; Ananiev et al. 1998c; Miller et al. 1998; Presting et al. 1998; Nonomura and Kurata 1999) and one of these, the sorghum pSau3A9 sequence, was successfully mapped to the centromeres of maize pachytene chromosomes (Chen et al. 1998).

Knobs are heterochromatic regions on maize chro-mosomes and are most conspicuous at prophase of the first meiotic division. The size, number, and chromo-somal distribution of knobs vary among strains but are constant within strains (McClintock et al. 1981). Recent-ly, Ananiev et al. (1998a,b) found that the molecular structure of knobs is complex, consisting of two tandem repeats, the 180-bp element discovered by Peacock et al. (1981) and a new 350-bp element (TR-1), and various retrotransposons. The two tandem repeats may be pres-ent in the same knob, in differpres-ent knobs, or in regions where knob heterochromatin is not apparent (Ananiev et al. 1998b). Knobs are excellent landmarks on maize pachytene chromosomes.

In investigation reported here we isolated a centro-meric sequence and the 180-bp and TR-1 repeats from maize genomic DNA based on previously published se-quences and used these, together with Nicotiana plumba-ginifolia 26S rDNA and rice 5S rDNA, as probes to hy-bridize pachytene chromosomes of maize inbred line KYS. From the distribution of these sequences we con-structed a karyotype. The technique and results presented form an important basis for using FISH for physical mapping and for investigating chromosome orientation and pairing during meiosis.

Materials and methods

Plant material and chromosome preparation

Zea mays L. inbred line KYS (2n=20), obtained from the Maize Genetics Cooperation Stock Center, University of Illinois, USA, and from Prof. D.B. Walden, Department of Plant Science, Uni-versity of Western Ontario, Canada, was used in all experiments. Meiotic chromosome spreads for FISH were prepared according to Chen et al. (1998).

Cloning of centromeric and knob-associated sequences Centromeric sequences

Maize genomic DNA was isolated as described by Suen et al. (1997). Centromeric sequences were amplified by polymerase

chain reaction (PCR) with maize genomic DNA and oligonucle-otide 5′GGTGCCCGATCTTTCGATGAGA3′. The oligonucleotide spans positions 236–214 in centromeric sequence CCS1 of the wild grass Brachypodium sylvaticum and was designated primer D by Aragón-Alcaide et al. (1996). The PCR products were polished by T4 polymerase and cloned into pUC18 (Sambrook et al. 1989). The cloned PCR products were screened for centromeric sequenc-es by FISH to maize pachytene chromosomsequenc-es. Positive clonsequenc-es were sequenced using an Applied Biosystem ABI377 DNA se-quencer. Homology searches were made against sequences in the nucleic acid database of Genbank using BLASTN.

180-bp repeats

Genomic DNA of maize was digested with HaeIII (Peacock et al. 1981) and electrophoresed on a 1.5% agarose gel. DNA fragments corresponding to the monomer and dimer of the 180-bp repeat were recovered, cloned into pUC18, and screened by colony and Southern blot hybridizations using oligonucleotide 5′ AA-GGAAACATATGTGGGGAGAGGTGTA3′, a conserved region in the repeat (Dennis and Peacock 1984), as a probe. Some posi-tive clones were sequenced.

TR-1 (350-bp) repeats

Genomic DNA of maize was digested with EcoRI (Ananiev et al. 1998b) and electrophoresed on a 1.5% agarose gel. DNA frag-ments corresponding to the monomer of the TR-1 repeat were re-covered, cloned into pUC18 and screened by colony and Southern blot hybridizations using oligonucleotide 5′TTAGAGTACAAC TAGTGGATGAAG3′ (Ananiev et al. 1998b) as a probe. Some positive clones were sequenced.

Source and labeling of probes

Five repetitive sequences were used as probes. Centromeric se-quence ZmCR2.6c, a dimer of the 180-bp repeat, ZmKR180–2, and a monomer of the TR-1 repeat, ZmKR350–1, were obtained in the present study. pRTy5S, a 3-kb tandem array of rice 5S rDNA cloned into pTZ19R, was provided by Dr. H.K. Wu, Institute of Botany, Academia Sinica (Chung et al. 1993). pNP26S is a 1-kb EcoRI fragment from Nicotiana plumbaginifolia 26S rDNA cloned into pBluescript (Y.Y. Kao unpublished data). Probes were labeled with digoxigenin-11-dUTP or biotin-16-dUTP by nick translation or PCR according to the protocols of labeling kits pro-vided by the manufacturer (Boehringer Mannhein).

Fluorescence in situ hybridization

The hybridization mixture consisted of 40–50% formamide (de-pending on the homology between probe and target sequences), 2× standard saline citrate (SSC), 10% dextran sulfate, 0.1% sodium dodecyl sulfate (SDS), 5 ng/µl probe DNA, and 1 µg/µl herring sperm DNA. Hybridization was carried out at 37°C for 20 h, fol-lowed by washes in 20% formamide, 0.2–2×SSC (depending on the homology between probe and target sequences) at 42°C for 10 min, in 2×SSC at 42°C for 10 min, and in 2×SSC at room tem-perature for 3×5 min. To investigate the relative chromosomal lo-cations of two repetitive sequences, we hybridized the probes to pachytene spreads either simultaneously or sequentially as de-scribed by Heslop-Harrison et al. (1992). Digoxigenin-labeled probes were detected with fluorescein-conjugated antibodies (Boehringer Mannhein), and signals were amplified with fluores-cein-conjugated anti-sheep IgG (Vector). Biotin-labeled probes were detected with avidin-Texas Red (Vector). Chromosomes were counterstained with PI or DAPI. Slides were visualized un-der an Olympus AX70 fluorescence microscope with appropriate filter sets, and the images were photographed on Fujicolor Supera 200 ASA print film. For karyotype construction, images on the negatives were projected and measured on white papers at a mag-nification of 6,000×.

(3)

Results

Isolation and characterization of a centromeric sequence PCR with maize genomic DNA and primer D of Aragón-Alcaide et al. (1996) yielded six major fragments of 0.9 kb, 1.0 kb, 1.1 kb, 1.5 kb, 1.8 kb, and 2.1 kb. These fragments were cloned and tested for the presence of the centromeric sequence by FISH to maize pachytene chro-mosomes. Among these clones, pZmCR2.6 (1.8 kb) hy-bridized the strongest to primary constrictions (data not shown). Digestion of pZmCR2.6 with restriction en-zymes KpnI and HindIII yielded three subfragments of 1.0 kb, 0.5 kb, and 0.3 kb. Only subclone pZmCR2.6c (0.3 kb) was successfully sequenced (EMBL accession number Y18897). ZmCR2.6c is 65% identical to bases 421–721 of the sorghum pSau3A9 sequence and is 33% identical to bases 415–763 of a barley 809-bp sequence, the putative LTR/integrase coding regions of Ty3/gypsy-type retrotransposons (Miller et al. 1998; Presting et al. 1998).

FISH of ZmCR2.6c to meiotic chromosomes of KYS showed that hybridization signals occurred exclusively in the primary constrictions of pachytene bivalents (Fig. 1A,B) and in the stretched regions of metaphase I (MI) and anaphase I (AI) chromosomes (Fig. 1C). We also found that signals in centromeres of the ten pachy-tene chromosomes could be classified into two types: those in chromosomes 2, 7, 9, and 10 were weaker, more diffused, and located in the center of the centromere, while those in the remaining chromosomes were strong-er, more condensed, and embedded in the pericentric het-erochromatin (Fig. 1A). Giemsa staining of the same cells after FISH showed that centromeres of the first type were larger in size, lighter in color – almost appear as gaps – and more easily identified than those of the second type (Fig. 1D).

Pachytene karyotype revealed by FISH with a centromere-specific sequence

The pachytene chromosomes could be easily traced and their centromeres were clearly visible in PMCs hybrid-ized with ZmCR2.6c (Fig. 1A, B). Although some chro-mosome regions were stretched somewhat, the individu-al chromosomes in many cells could still be identified with the aid of other cytological markers such as knobs, nucleolar organizer region (NOR) and satellite.

Seven good-quality pachytene spreads (e.g., Fig. 1A, B) were selected for measurements of the karyotype. The chromosome lengths, expressed as percentages of total complement length (%TCL), and arm ratios were calcu-lated. In the measurements, the heterochromatic NOR was included as a portion of the short arm of chromo-some 6, but the secondary constriction and the satellite were excluded, in accordance with the accepted practice in karyotyping with somatic metaphase chromosomes. As shown in Table 1, results from FISH are consistent

with those obtained from traditional analyses. The only major discrepancy among investigations is the arm ratio of chromosome 6 (see Discussion).

Localization of 180-bp repeats

Many clones containing the 180-bp repeat were isolated but only four were sequenced. Of these, one is a mono-mer and one is a dimono-mer of the 180-bp repeat; the remain-ing two are 202-bp related sequences. Homology among these sequences and those reported by Peacock et al. (1981), Dennis and Peacock (1984) and Ananiev et al. (1998a) is 82–97%.

FISH of the 180-bp repeat to pachytene chromosomes revealed that in addition to knobs on 5L, 6S, 6L, 7L, and 9S, which were heavily labeled as expected from the re-sults of Peacock et al. (1981), medium and weak hybrid-ization signals were detected at many chromosomal sites where heterochromatic knobs were not apparent (Fig. 1E). In order to determine the precise locations of the medium and weak signals, we first hybridized pachy-tene chromosomes with ZmCR2.6c to localize centrome-res (Fig. 1B), then we washed slides with 4×SSC/Tween 20 and reprobed chromosome preparations with the 180-bp repeat (Fig. 1F). In this way, we were able to show that the termini of 1S, 2S, 3S, 6L and 8S, the sec-ondary constriction on 6S, and sites at 1L.51, 4L.42, 4L.55, and 5S.34 all contain 180-bp repeats (cf. Fig. 1B, E and F; Fig. 2).

To understand the relative position of rDNA and the 180-bp repeat in the secondary constriction, we hybrid-ized pachytene chromosomes simultaneously with N. plumbaginifolia 26S rDNA and 180-bp repeats. At late

Fig. 1A–J Distribution of repetitive DNA sequences on meiotic

chromosomes of maize inbred line KYS. A,B Pachytene chromo-somes (red) probed with centromeric sequence ZmCR2.6c (green). Arrowheads and arrows in A indicate two types of centromeres (see text). C MI/AI chromosomes (red) probed with ZmCR2.6c (green). Note the presence of signals in stretching regions of the chromosomes. D The same chromosomes in A stained with Giem-sa. Arrowheads and arrows indicate two types of centromeres.

E Late pachytene chromosomes (red) probed with the 180-bp

knob repeat (green). Weak signals are indicated by arrows. Chro-mosomes are identified from comparison with B and F. F The same chromosomes (red) as in B reprobed with the 180-bp repeat (green). Weak signals at the termini of 1S, 2S, 3S, 6L and 8S, in the secondary constriction on 6S, and at sites in 1L, 4L and 5S are indicated by arrows. G Pachytene chromosomes (blue) simulta-neously probed with 26S rDNA (red) and the 180-bp repeat (green). Note overlapping of red and green signals (arrow) at the distal end of NOR in 6S. H Portion of a PMC at early pachytene stage, showing the distribution 26S rDNA (red) and the 180-bp re-peat (green) in the short arm (blue) of chromosome 6. Note over-lapping of red and green signals (arrow) in the NOR-secondary constriction. I Pachytene chromosomes (blue) simultaneously probed with the180-bp repeat (green) and the TR-1 repeat (red). Chromosome 4 is identified by the presence of two small clusters of 180-bp repeats (arrows) in the long arm. J Portion of a PMC at pachytene stage, showing the position of 5S rDNA (green) in 2L (red). Arrow indicates the centromere. Bar: 10 µm

(4)
(5)

pachynema, when chromosomes were more condensed, signals from 180-bp repeats appeared at the most distal end of rDNA tandem repeats (Fig. 1G). At early pachy-nema, when chromosomes were less condensed, 180-bp repeats clustered within the NOR-secondary constriction (Fig. 1H).

Localization of TR-1 elements

Among the many TR-1 element-containing clones isolat-ed, only two were sequenced. Homology among these two clones and one clone isolated by Ananiev et al. (1998b) is over 85%.

Table 1 Lengths and arm ratios of maize pachytene chromosomes derived from the acetocarmine squash technique and FISH

Chrome- Rhoades 1950 Sheridan 1982 Neuffer et al. 1997 This study some Length %TCLa, b L/Sc %TCLb L/S Unit %TCLb L/S %TCL L/S (µm) Length 1 82.40 14.91 1.30 15.66 1.46 229 14.51 1.23 14.80±0.64 1.31±0.13 2 66.50 12.03 1.25 11.82 1.43 196 12.42 1.42, 1.14e 12.27±0.47 1.17±0.09 3 62.00 11.22 2.00 11.04 2.32 179 11.34 2.0 11.13±0.55 2.07±0.13 4 58.78 10.64 1.60 10.44 1.42 175 11.09 1.63, 2.0e 10.96±0.68 1.67±0.18 5 59.82 10.82 1.10 10.69 1.14 175 11.09 1.07 11.46±0.76 1.06±0.09 6 48.73 8.82 7.10, 3.10d 8.34 2.72 122 7.73 3.1 7.93±0.42 4.33±0.71 7 46.78 8.46 2.80 8.79 2.60 140 8.87 2.6 8.12±0.48 2.79±0.40 8 47.48 8.59 3.20 8.71 3.26 140 8.87 3.0 8.49±0.35 3.42±0.44 9 43.24 7.82 1.80 7.47 2.01 122 7.73 2.0 8.08±0.91 1.93±0.34 10 36.93 6.68 2.80 7.04 2.70 100 6.34 2.6 6.75±0.56 2.64±0.15

aTCL, Total complement length bCalculated by authors of this paper cL/S, Long-to-short chromosome arm ratio

dDempsey (1994)

eTwo forms of chromosomes

Fig. 2A, B Idiogram of the

pachytene chromosomes of maize inbred line KYS based on the distribution of repetitive DNA sequences. A Complete chromosome set. B Enlarged portion of 6S showing heterochromatin, NOR-secondary constriction, satel-lite, and terminal knob. Arrows indicate centromeres

(6)

Chromosomal locations of TR-1 elements relative to 180-bp repeats were investigated by two-color FISH. In all of the PMCs examined, only two clusters of signals from TR-1 repeats were observed, one located in the long arm of chromosome 4 at a site approximately 0.89 distal to the centromere and the other co-located with signals from 180-bp repeats in the terminal knob (satel-lite) on 6S (Fig. 1I).

Localization of 5S rDNA

FISH of rice 5S rDNA to pachytene chromosomes (Fig. 1J) is consistent with the result from radioactive in situ hybridization that 5S rRNA genes are clustered at 2L.88 (Mascia et al. 1981).

Discussion

CCS1 and pSau3A9 are two centromere-associated se-quences originally derived from Brachypodium sylva-ticum (Argón-Alcaide et al. 1996) and Sorghum bicolor (Jiang et al. 1996), respectively. Sequences homologous to CCS1 and pSau3A9 have been isolated from other species of the grass family and subsequently mapped to the centromeric regions of somatic metaphase chromo-somes by FISH (Ananiev et al. 1998c; Miller et al. 1998; Presting et al. 1998; Nonomura and Kurata 1999). In this study we isolated a maize homology of the sorghum pSau3A9 sequence, ZmCR2.6c, and hybridized it to mei-otic chromosomes of maize. Our results clearly indicate that hybridization signals are present in the primary con-striction of pachytene bivalents and in the stretched re-gions of MI and AI chromosomes where the spindle at-taches. These results strongly suggest that ZmCR2.6c is a centromeric sequence, although its function is not known.

Dempsey (1994) recognized two types of centromeres in acetocarmine-stained pachytene spreads of KYS. Centromeres of chromosomes 2, 7, 9, and 10 are large, rectangular in shape, and easily identified, whereas those of the remaining chromosomes are small, circular in shape, and often protrude to one side of the linear axis of the bivalents. Ananiev et al. (1998c) found that two maize centromeric elements, CentA and CentC, differ in proportion and arrangement in different centromeres. In the present investigation, we observed that FISH signals on the first type of centromeres of Dempsey (1994) were weaker, more diffused, and could be distinguished from the surrounding heterochromatin, whereas signals on the second type of centromeres were stronger, more con-densed, and embedded in blocks of heterochromatin (Fig. 1A). This may reflect differences in the copy num-ber and arrangement of repetitive and unique sequences in the centromeric regions of different chromosomes.

Since in FISH the pachytene chromosomes are easily traceable and their centromeres can be precisely mapped, we measured chromosome lengths and calculated the

arm ratios of several good-quality cells. Our data agree well with those from traditional analysis, except for the arm ratio of chromosome 6 (Table 1). This discrepancy may be attributed to different views on the length of the short arm which carries NOR-heterochromatin, the NOR-secondary constriction, and a satellite.

In this study we have shown by FISH that 180-bp re-peats are present not only in knobs on chromosome arms 5L, 6S, 6L, 7L, and 9S as previously reported (Peacock et al. 1981) but also in regions where heterochromatin is not apparent, such as the termini of 1S, 2S, 3S, 6L, and 8S, the NOR-secondary constriction on 6S, and interstiti-al regions in 1L, 4L, and 5S. This is consistent with sults from Southern blot hybridization of the 180-bp re-peat to genomic DNA from oat-maize monosomic addi-tion lines (Ananiev et al. 1998a). These investigators found that every Seneca 60 maize chromosome in the lines analyzed possessed 180-bp repeats, with copy num-bers ranging from 100 to 25,000. The abundance, tandem repetitiveness, and chromosome-specific distribution of the 180-bp repeat make it an excellent cytological mark-er for maize pachytene chromosomes.

The minor 180-bp FISH signals on the termini of 1S, 2S, 3S, and at 1L.51 correspond approximately to the knob positions observed in different races of maize, whereas signals on the termini of 6L, 8S, and at 4L.42, 4L.55, and 5S.34 have not been reported to be knob sites (McClintock et al. 1981; Neuffer et al. 1997). The pres-ence of 180-bp repeats in the NOR-secondary constric-tion observed in this study is inconsistent with the result of Peacock et al. (1981), who found that 3H-labeled cRNA of the 180-bp repeat could not hybridize to NOR. Recently, Ananiev et al. (1998b) reported the observa-tion of ”a small cluster of signals at the chromomere flanking the NOR on the satellite of chromosome 6” in FISH experiments in which pachytene chromosomes of Seneca 60 were probed with 180-bp and TR-1 repeats. On the basis of the photographs they presented, we pre-sume that the site of signals is in the NOR-secondary constriction. The presence of 180-bp and TR-1 repeats in the NOR-secondary constriction is novel and worth fur-ther investigation.

Recently, Ananiev et al. (1998b) isolated a new type of tandemly repeated sequence, TR-1 elements, from the knob DNA of Seneca 60. TR-1 elements are about 350 bp in length and comprise approximately 2% of the total genome, an amount equivalent to or not less than that of 180-bp repeats (Ananiev et al. 1998a). Compara-tive FISH of these two types of repeats indicates eight sites of TR-1 elements on the pachytene chromosome of Seneca 60; of these, five also contain 180-bp repeats (Ananiev et al. 1998b). Peacock et al. (1981) believe that all knobs in KYS are composed of only 180-bp repeats. However, in this study we have isolated TR-1 repeats from genomic DNA of KYS and mapped them to the ter-minal knob on 6S, where 180-bp repeats are also present, and to a site in 4L. The co-localization of the two types of repeats in the terminal knob on 6S explains why the size of this knob does not correspond with the content of

(7)

180-bp repeats as observed by Peacock et al. (1981). It seems that maize has two types of knob-associated se-quences, the 180-bp and TR-1 repeats, which differ in absolute content, relative proportion, and chromosome location among strains. Ananiev et al. (1998b) found two homologous regions between these two types of repeats and proposed that the TR-1 element evolved from 180-bp repeat as the result of a duplication and subsequent divergence. These repeats, therefore, are useful tools for investigating the phylogeny and evolution of maize and its relatives.

In this study, we have successfully mapped a centro-meric sequence and several tandem repeats to the pachytene chromosomes of maize by FISH (Fig. 2). The combination of chromosome length, centromere posi-tion, and distribution of the tandem repeats enabled all chromosomes to be identified with great confidence. Consequently, the technique and results presented form an important basis for mapping low-copy number and unique sequences on chromosomes and allow the inte-gration of the genetic, molecular, and cytological maps of maize.

Acknowledgements We are grateful to Dr. H.K. Wu for his

gen-erous gift of the clone pRTy5S and to the Maize Genetics Cooper-ation Stock Center and Dr. D.B. Walden for supplying seeds of maize inbred line KYS. This study was supported by grant nos. NSC88–2311-B-002–001 and NSC89–2311-B-002–005 from the National Science Council, Republic of China. The experiments performed in this study comply with the current laws of the Re-public of China.

References

Ananiev EV, Phillips RL, Rines HW (1998a) Complex structure of knob DNA on maize chromosome 9: retrotransposon invasion into heterochromatin. Genetics 149:2025–2037

Ananiev EV, Phillips RL, Rines HW (1998b) A knob-associated tandem repeat in maize capable of forming fold-back DNA segments: are chromosome knobs megatransposons? Proc Natl Acad Sci USA 95:10785–10790

Ananiev EV, Phillips RL, Rines HW (1998c) Chromosome-specific molecular organization of maize (Zea mays L.) centromeric re-gions. Proc Natl Acad Sci USA 95:13073–13078

Aragón-Alcaide L, Miller T, Schwarzacher T, Reader S, Moore G (1996) A cereal centromeric sequence. Chromosoma 105:261– 268

Armstrong SJ, Fransz P, Marshall DF, Jones GH (1998) Physical mapping of DNA repetitive sequences to mitotic and meiotic chromosomes of Brassica oleracea var. alboglabra by fluores-cence in situ hybridization. Heredity 81:666–673

Carlson WR (1988) The cytogenetics of corn. In: Sprague GF, Dudley JW (eds) Corn and corn improvement. American Soci-ety of Agronomy, Madison, Wis., pp 259–344

Chen CC, Chen CM, Yang JT, Kao YY (1998) Localization of a repetitive DNA sequence to the primary constrictions of maize pachytene chromosomes. Chromosome Res 6:236–238 Chung MC, Ning CN, Wu HK (1993) Localization of ribosomal

RNA genes on rice chromosomes. Bot Bull Acad Sin 34:43– 55

Dempsey E (1994) Traditional analysis of maize pachytene chro-mosomes. In: Freeling M, Walbot V (eds) The maize hand-book. Springer, Berlin Heidelberg New York, pp 432–441 Dennis ES, Peacock WJ (1984) Knob heterochromatin homology

in maize and its relatives. J Mol Evol 20:341–345

Dong F, Miller JT, Jackson SA, Wang GL, Ronald PC, Jiang J (1998) Rice (Oryza sativa) centromeric regions consist of complex DNA. Proc Natl Acad Sci USA 95:8135–8140 Edwards KJ, Thompson H, Edwards D, de Saizien A, Sparks C,

Thompson JA, Greenland AJ, Eyers M, Schuch W (1992) Construction and characterisation of a yeast artificial chromo-some library containing three haploid maize genome equiva-lents. Plant Mol Biol 19:299–308

Fransz P, Armstrong S, Alonso-Blanco C, Fischer TC, Torres-Ruiz RA, Jones G (1998) Cytogenetics for the model system Arab-idopsis thaliana. Plant J 13:867–876

Heslop-Harrison JS, Harrison GE, Leitch IJ (1992) Reprobing of DNA:DNA in situ hybridization preparations. Trends Genet 8:372–373

Jiang J, Gill BS (1994) Nonisotopic in situ hybridization and plant genome mapping: the first 10 years. Genome 37:717–725 Jiang J, Nasuda S, Dong F, Scherrer CW, Woo SS, Wing RA, Gill

BS (1996) A conserved repetitive DNA element located in the centromeres of cereal chromosomes. Proc Natl Acad Sci USA 93:14210–14213

Mascia PN, Rubenstein I, Phillips RL, Wang AS, Xiang LZ (1981) Localization of the 5S rRNA genes and evidence for diversity in the 5S rDNA region of maize. Gene 15:7–20

McClintock B, Kato TA, Blumenschein A (1981) Chromosome constitution of races of maize. Colego de Postgraduados Chapingo, Mexico

Miller JT, Dong F, Jackson SA, Song J, Jiang J (1998) Retrotrans-poson-related DNA sequences in the centromeres of grass chromosomes. Genetics 150:1615–1623

Neuffer MG, Coe EH, Wessler SR (1997) Mutants of maize. Cold Spring Harbor Laboratory Press, New York

Nonomura KI, Kurata N (1999) Organization of the 1.9-kb repeat unit RCE1 in the centromeric region of rice chromosomes. Mol Gen Genet 261:1–10

Peacock WJ, Dennis ES, Rhoades MM, Pryor AJ (1981) Highly repeated DNA sequence limited to knob heterochromatin. Proc Natl Acad Sci USA 78:4490–4494

Presting GG, Malysheva L, Fuchs J, Schubert I (1998) A Ty3/gypsy retrotransposon-like sequence localizes to the centromeric re-gions of cereal chromosomes. Plant J 16:721–728

Rhoades MM (1950) Meiosis in maize. J Hered 41:58–67

Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a labo-ratory manual. Cold Spring Harbor Labolabo-ratory Press, New York Sheridan WF (1982) Maps, markers and stocks. In: Sheridan WF

(ed) Maize for biological research. Plant Mol Biol Assoc, Charlottesville, Va., pp 37–52

Suen DF, Wang CK, Lin RF, Kao YY, Lee FM, Chen CC (1997) Assignment of DNA markers to Nicotiana sylvestris chromo-somes using monosomic alien addition lines. Theor Appl Genet 94:331–337

Trask BJ (1991) Fluorescence in situ hybridization: applications in cytogenetics and gene mapping. Trends Genet 5:149–154 Viegas-Péquignot E, Berrard S, Brice A, Apion F, Mallet J (1991)

Localization of a 900-bp-long fragment of the human choline acetyltransferase gene to 10q11.2 by nonradioactive in situ hy-bridization. Genomics 9:210–212

Xu J, Earle ED (1996a) Direct FISH of 5S rDNA on tomato pachytene chromosomes places the gene at the heterochromat-ic knob immediately adjacent to the centromere of chromo-some 1. Genome 39:216–221

Xu J, Earle ED (1996b) High resolution physical mapping of 45S (5.8S, 18S and 25S) rDNA gene loci in the tomato ge-nome using a combination of karyotyping and FISH of pachy-tene chromosomes. Chromosoma 104:545–550

Zhong X, de Jong JH, Zabel P (1996a) Localization of repetitive sequences on metaphase and pachytene chromosomes of to-mato using fluorescence in situ hybridization. Chromosome Res 4:24–28

Zhong X, Fransz PF, Wennekes-van Eden J, Zabel P, Van Kammen A, de Jong JH (1996b) High resolution mapping on pachytene chromosomes and extended DNA fibres by fluorescence in situ hybridization. Plant Mol Biol Rep 14:232–242

參考文獻

相關文件

Among oral squamous cell carcinomas (SCC) with previously biopsied, site-specific precursor lesions, 55.7% arose from ED/carcinoma in situ and 28.0% arose from HkNR..

² Stable kernel in a goals hierarchy is used as a basis for establishing the architecture; Goals are organized to form several alternatives based on the types of goals and

In addition, we successfully used unit resistors to construct the ratio of consecutive items of Fibonacci sequence, Pell sequence, and Catalan number.4. Minimum number

In this paper, we propose a practical numerical method based on the LSM and the truncated SVD to reconstruct the support of the inhomogeneity in the acoustic equation with

Based on [BL], by checking the strong pseudoconvexity and the transmission conditions in a neighborhood of a fixed point at the interface, we can derive a Car- leman estimate for

Then they work in groups of four to design a questionnaire on diets and eating habits based on the information they have collected from the internet and in Part A, and with

In this paper, by using the special structure of circular cone, we mainly establish the B-subdifferential (the approach we considered here is more directly and depended on the

The algorithms have potential applications in several ar- eas of biomolecular sequence analysis including locating GC-rich regions in a genomic DNA sequence, post-processing