• 沒有找到結果。

Austin, J. D., S. C. Lougheed, and P. T. Boag, 2004. Discordant temporal and geographic pattern in maternal lineages of eastern north American frogs, Rana catesbeiana (Ranidae) and Pseudacris crucifer (Hylidae). Molecular Phylogenetics and Evolution 32: 799-816.

Avise, J. C., 1986. A note for molecular genetics in the recognition and conservation of endangered species. Trend in Ecology and Evolution 4: 279-281.

Avise, J. C., 2000. Phylogeography: The history and formation of species. Harvard University Press, Cambridge.

Avise, J. C., J. Arnold, R. M. Ball, E. Bermingham, T. Lamb, J. E. Neigel, C. A. Reeb, and N. C.

Saunders, 1987. Intraspecific phylogeography: the mitochondrial DNA bridge between population genetics and systematics. Annual Review of Ecology and Systematics 8:

489-522.

Boulenger, G. A., 1909. Descriptions of four new frogs and a new snake discovered by Mr. H.

Sauter in Formosa. Annals and Magazine of Natural History 8: 492-496.

Cheng, H. L., S. Huang, and S. C. Lee, 2005. Morphological and molecular variation in Rhinogobius rubromaculatus (Pisces: Gobiidae) in Taiwan. Zoological Studies 44:

119-129.

Clement, M., D. Posada, and K. Crandall, 2000. TCS: a computer program to estimate gene genealogies. Molecular Ecology 9: 1657-1660.

Creer, S., A. Malhotra, R. S. Thorpe, and W. H. Chou, 2001. Multiple causation of phylogeographical pattern as revealed by nested clade analysis of the bamboo viper (Trimeresurus stejnegeri) within Taiwan. Molecular Ecology 10: 1967-1981.

Drummond, A. J., and A. Rambaut, 2007. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evolutionary Biology 7: 214.

- 25 -

Dupanloup, I., S. Schneider, and Excoffier, L, 2002. A simulated annealing approach to define the genetic structure of populations. Molecular Ecology 11: 2571-81.

Excoffier, L., and S. Schneider, 2005. Arlequin ver. 3.0: An integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online 1: 47-50.

Felsenstein, J., 1985. Confidence limits on phylogenies: an approach using the bootstrap.

Evolution 39: 783-791.

Fu, Y. X., 1997. Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics 147: 915-925.

Grant, W. S., and B. W. Bowen, 1998. Shallow population histories in deep evolutionary lineages of marine fishes: insights from sardines and anchovies and lessons for conservation. Journal of Heredity 89: 415-426.

Graur, D., and W. H. Li, 2000. Fundamentals of Molecular Evolution, 2nd ed. Sinauer Associates, Inc., Sunderland.

Harpending, H., 1994. Signature of ancient population growth in a low-resolution mitochondrial DNA mismatch distribution. Human Biology 66: 591-600.

Harrison, S., and A. Hastings, 1996. Genetic and evolutionary consequences of metapopulation structure. Trend in Ecology and Evolution 11: 180-183.

Huang, W. S., J. K. Lee, and C. H. Ho, 2001. Reproductive patterns of two sympatric

rhacophorid frogs, Buergeria japonica and B. robusta, with comments on anuran breeding seasons in Taiwan. Zoological Science 18: 63-70.

Kumar, S., J. Dudley, M. Nei, and K. Tamura, 2008. MEGA: A biologist-centric software for evolutionary analysis of DNA and protein sequences. Briefings in Bioinformatics 9:

299-306.

Jang-Liaw N. H., T. H. Lee, and W. H. chou, 2008. phylogeography of Sylvirana latouchii (Anura, Ranidae) in Taiwan. Zoological Science 25: 68–79.

- 26 -

Lin, H. C., S. H. Li, J. Fong, and S. M. Lin, 2008 . Ventral coloration differentiation and mitochondrial sequences of the Chinese Cobra (Naja atra) in Taiwan. Conservation Genetics 9: 1089-1097.

Lin, H. D., K. C. Hsu, K. T. Shao, Y. C. Chang, J. P. Wang, C. J. Lin, and T. Y. Chiang, 2008.

Population structure and phylogeography of Aphyocypris kikuchii (Oshima) based on mitochondrial DNA variation. Journal of Fish Biology 72: 2011–2025.

Liao, T. Y., T. Y. Wang, H. D. Lin, S. C. Shen, and C. S. Tzeng, 2008. Phylogeography of the endangered species, Sinogastromyzon puliensis (Cypriniformes: Balitoridae), in

southwestern Taiwan based on mtDNA.Zoological Studies 47: 383-392.

Lue, K. Y., and S. M. Lin, 2008. Two New Crypic Species of Takydromus (Squamata:

Lacertidae) from Taiwan. Herpetologica 64: 379-395.

Ma, G. C., H. S. Tsao, H. P. Lu, and H. T. Yu, 2006. AFLPs congruent with morphological differentiation of Asian common minnow Zacco (Pisces: Cyprinidae) in Taiwan. Zoologica Scripta 35: 341–351.

Miller, M. P, 2005. Alleles In Space: Computer software for the joint analysis of interindividual spatial and genetic information. Journal of Heredity 96: 722-724.

Nei, M., and F. Tajima, 1983. Maximum likelihood estimation of the number of nucleotide substitutions from restriction sites data. Genetics 105: 205-217.

Nei, M., 1987. Molecular Evolutionary Genetics. Columbia Univ. Press. New York.

Page, R. D. M., and E. C. Holmes, 1998. Molecular evolution: A phylogenetic approach.

Blackwell Science Inc. London.

Panchal, M., 2007. The automation of nested clade phylogeographic analysis. Bioinformatics 23:

509-510.

Palo, J. U., D. S. Schmeller, A. Laurila, C. R. Primmer, S. L. Kuzmin, and J. Merila, 2004. High degree of population subdivision in a widespread amphibian. Molecular Ecology 13:

2631-2644.

- 27 -

Posada, D., and K. A. Crandall, 1998. MODELTEST: testing the model of DNA substitution.

Bioinformatics 14: 817-818.

Ramos-Onsins, S. E., and J. Rozas, 2002. Statistical properties of new neutrality tests against population growth. Molecular Biology and Evolution 19: 2092-2100.

Rogers, A. R., and H. Harpending, 1992. Population growth makes waves in the distribution of pairwise genetic differences. Molecular Biology and Evolution 9: 552-569.

Ronquist, F., and J. P. Huelsenbeck, 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 572-1574.

Rozas, J., J. C. Sanchez-DelBarrio, X. Messeguer, and R. Rozas, 2003. DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19:

2496-2497.

Slatkin, M., 1985. Gene flow in natural population. Annual Review of Ecology and Systematics 16: 393-430.

Slatkin, M., 1993. Isolation by distance in equilibrium and non-equilibrium populations.

Evolution 47: 264-279.

Slatkin, M., and R. R. Hudson, 1991. Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations. Genetics 129: 555-562.

Tajima, F., 1989. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123: 585-595.

Tamura, K., and M. Nei, 1993. Estimation of the number of nucleotide substitution in the control region of mitochondrial DNA in humans and chimpanzees.Molecular Biology and Evolution 10: 512–526.

Templeton, A. R., 2004. Statistical phylogeography: methods of evaluating and minimizing inference errors. Molecular Ecology 13: 789-809.

- 28 -

Thomas, S., 2002. Influence of habitat fragmentation on the genetic structure of Polyommatus coridon (Lepidoptera: Lycaenidae): implications for conservation. Biological Conservation 107: 291-297.

Toda, M., M. Nishida, M. Matsui, K.Y. Lue, and H. Ota, 1998. Genetic variation in the Indian rice frog, Rana limnocharis (Amphibia: Anura), in Taiwan, as revealed by allozyme data.

Herpetologica 54: 73-82.

Tzeng, C. S., 1986. Distribution of freshwater fishes of Taiwan. Journal of Taiwan Museum 39:

127-146.

Wang, H.Y., M. P. Tsai, M. J. Yu, and S. C. Lee, 1999. Influence of glaciation on divergence patterns of the endemic minnow, Zacco pachycephalus, in Taiwan. Molecular Ecology 8:

1879–1888.

Wang, J. P., H. D. Lin, S. Huang, C. H. Pan, X. L. Chen, and T. Y. Chiang, 2004.

Phylogeography of Varicorhinus barbatulus (Cyprinidae) in Taiwan based on nucleotide variation of mtDNA and allozymes .Molecular Phylogenetics and Evolution 31:

1143-1156.

Wang, J. P., K. C. Hsu, and T. Y. Chiang, 2000. Mitochondrial DNA phylogeography of Acrossocheilus paradoxus (Cyprinidae) in Taiwan. Molecular Ecology 9: 1483–1494.

Wang, T. Y., C. S. Tzeng, H. Y. Teng, and T. Chang, 2007a. Phylogeography and identification of a 187-bp-long duplication within the mitochondrial control region of Formosania lacustre (Teleostei: Balitoridae). Zoological Studies 46: 569-582.

Wang, T. Y., T. Y. Liao, and C. S. Tzeng, 2007b. Phylogeography of the Taiwanese endemic hillstream loaches, Hemimyzon formosanus and H. taitungensis (Cypriniformes:

Balitoridae). Zoological Studies 46: 569-582.

Wright, S., 1943. Isolation by distance. Genetics 28: 114-138.

- 29 -

Wu, J. H., C. H. Hsu, L. S. Fang, and I. S. Chen, 2007. Themolecular phylogeography of Candidia barbata species complex (Teleostei: Cyprinidae) from Taiwan. The Raffles Bulletin of Zoology 14: 61–67.

Yang, Y. J., Y. S. Lin, J. L. Wu, and C. F. Hui, 1994. Variation in mitochondrial DNA and population structure of the Taipei treefrog Rhacophorus taipeianus in Taiwan. Molecular Ecology 3: 219-228.

Yang, Z. H., 1994. Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: Approximate methods. Journal of Molecular Evolution 39:

306-314.

王昭均,2006。臺灣東部地區草蜥屬雜交現象之偵測。國立臺灣師範大學生命科學研究所 碩士論文。臺北市。

向高世,2006。由粒線體核酸序列分析臺灣產攀蜥屬蜥蝪之親緣關係及生物地理。國立中 山大學生命科學研究所碩士論文。高雄市。

向高世,李鵬翔,楊懿如,2009。臺灣兩棲爬行類圖鑑。貓頭鷹出版社。臺北市。

朱哲民,1996。臺灣北部溪流蛙類群聚之研究。國立臺灣師範大學生物研究所碩士論文。

臺北市。

呂光洋,杜銘章,向高世,1999。臺灣兩棲爬行動物圖鑑。中華民國自然生態保育協會,

大自然雜誌社。臺北市。

林中一,2001。北縣雙溪河流域褐樹蛙之生殖生態與族群分布。國立臺灣大學動物學研究 所碩士論文

林弘都,2007。臺灣與中國大陸地區鯉科魚類之親緣地理研究。國立成功大學生命科學系 碩博士班博士論文。臺南市。

林孟龍,王鑫,2002。臺灣的河流。遠足文化出版社發行。

林思民,2003。臺灣及鄰近地區草蜥屬的親緣關係與親緣地理學研究(有鱗目:蜥蜴科)。

國立臺灣師範大學生命科學系博士論文。臺北市。

- 30 -

林彥博,2009。臺灣產黑蒙西氏小雨蛙(Microhyla heymonsi)族群遺傳結構與親緣地理學研 究。國立臺灣師範大學生命科學系碩士論文。臺北市。

林華慶,林思民,2007。臺灣地區龜殼花遺傳多樣性研究。行政院農業委員會林務局科技 計畫期末報告。臺北市。

許祐薰,2008。使用分子遺傳標記偵測白頭翁與烏頭翁可能的雜交子代。國立臺灣大學生 態與演化所碩士論文。臺北市。

許祐薰,許育誠,劉小如,2008。使用分子遺傳標記區辨烏頭翁、白頭翁及其雜交子代。

第七屆海峽兩岸鳥類學術研討會(1st, Jan., 2008)。臺北市。

許譽騰,1999。由族群遺傳結構探討白頭翁與烏頭翁之演化關係。國立臺灣大學動物所碩 士論文。臺北市。

陳宏年,2008。臺灣地區白腹游蛇族群遺傳與親緣地理。中國文化大學生命科學系學士論 文。臺北市。

陳聖宗,2001。臺灣與鄰近地區小鰾鮈分子親緣關係之研究。國立清華大學生命科學系碩 士論文。新竹市。

陳義雄,張詠青,2005。臺灣淡水魚類原色圖鑑:第壹卷--鯉形目。水產出版社。基隆市。

紀水上,1998。臺灣的氣侯。教育部環境保護小組發行。臺北市。

張天佑,2008。區內白頷樹蛙複合種群族群遺傳結構與分類地位之探討。國立臺灣師範大 學生命科學系碩士論文。臺北市。

張伊鈞,2008。以粒線體 DNA 與形態特徵探討艾氏樹蛙族群親緣地理與演化。國立中興 大學生命科學系碩士論文。臺中市。

張俊文,2006。臺灣北部溪流蛙類資源分配與人為干擾對資源利用影響之研究。國立臺灣 師範大學生命科學系碩士論文。臺北市。

張學文,劉國強,1997,斯文豪氏攀蜥的生物地理與分子親緣關係。野生動物保育經營管 理研討會論文集。臺北市。

張廖年鴻,2006。臺灣兩種赤蛙的親緣地理結構比較。中興大學生命科學系所博士論文。

臺中市。

- 31 -

曾晴賢,1992。臺灣纓口鰍之粒線體基因組和臺灣產平鰭鰍科魚類之分子演化的研究。國 立臺灣大學動物學研究所博士論文。臺北市。

楊胤勛,2009。賞蛙地圖,晨星出板有限公司,臺北市

黃仁磐,2007。臺灣特有種短腹幽蟌的多次入侵暨更新世晚期族群擴張事件。東海大學生 命科學系碩士論文。臺中市。

葉文珊,1997。莫氏樹蛙族群地理親源關係之研究。國立臺灣大學動物學研究所碩士論文。

臺北市。

蔡長益,1999。以粒線體 12S 核糖體核酸與細胞色素 b 序列分析守宮族群親緣關係。國立 中山大學生命科學研究所碩士論文。高雄市。

劉怡里,2000。以 RAPD 方法分析臺灣產樹蛙屬樹蛙之族群遺傳結構。國立臺灣大學動 物學研究所碩士論文。臺北市。

劉國強,1994。以粒線體核酸分析斯文豪氏攀析之生物地理與親緣關係。國立中山大學生 命科學研究所碩士論文。臺北市。

1

Figure 1. Sample localities and sample sizes of Buergeria robusta from each population in this study.

0 25 50km

W e s te rn lin e a g e

W100W110 W109 W096 W097W101 W120 W115 W108 W089 W102

W112 W098 W092 W125 W134W116 W121

W086 W079 W094

W091 W095

W123 W090 W119 W118 W083 W107W105 W084

W085 W103

W099W136 W142

W138 W072W093 W082

W073W078 W060 W087

W076

W050 W053

W019 W042 W043 W033 W023

W008 W007 W038

W018 W016

W010 W046 W040

W065

E013E012 E006

E034

E008 E043E036 E038E009 E011

E015 E029 E024E026 E019 E032

Figure 2. Neighbor-joining tree of the 201 haplotypes from Buergeria robusta cytochrome b

sequences. Statistic support on each node was represented by bootstrap values with 1000 replicates and Bayesian posterior probabilities.

NJ/BI Probability values

44/69

Figure 3. Network of the 201 Buergeria robusta haplotypes. The eastern and the western subnetworks were not connected because of large amount of mutation steps. The western network was further divided into 6 parts to be shown on the figure. Small open circles represent hypothetical unsampled haplotypes. Size of each haplotype circle roughly represents its sample size.

相關文件