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附件一
Developmental Biology 285, 238-251, 2005.
LrrA, a Novel Leucine Rich Repeat Protein Involved in Cytoskeleton Remodeling, Is Required for Multicellular Morphogenesis in Dictyostelium discoideum
Chia-I Liu
1, Tsung-Lin Cheng
2, Shu-Zhen Chen
1, Ying-Chieh Huang
1, and Wen-Tsan Chang
1,2,*1Department of Biochemistry, and 2Institute of Basic Medical Sciences, National Cheng Kung University Medical College, Tainan 701, Taiwan, ROC
Running title: A novel Dictyostelium morphogenesis gene
*Corresponding author.
Tel: +886-6-2353535 Ext. 5533.
Fax: +886-6-2741694.
E-mail address: [email protected].
ABSTRACT
Cell sorting by differential cell adhesion and movement is a fundamental process in multicellular morphogenesis. We have identified a Dictyostelium discoideum gene encoding a novel protein, LrrA, which composes almost entirely leucine-rich repeats (LRRs) including a putative leucine zipper motif. Transcription of lrrA appeared to be developmentally regulated with robust expression during vegetative growth and early development. lrrA null cells generated by homologous recombination aggregated to form loose mounds, but subsequent morphogenesis was blocked without formation of the apical tip. The cells adhered poorly to a substratum and did not form tight cell-cell agglomerates in suspension;
in addition, they were unable to polarize and exhibit chemotactic movement in the submerged aggregation and Dunn chamber chemotaxis assays. Fluorescence-conjugated phalloidin staining revealed that both vegetative and aggregation competent lrrA
-cells contained numerous F-actin enriched microspikes around the periphery of cells.
Quantitative analysis of the fluorescence-stained F-actin showed that lrrA
-cells exhibited a dramatically increase in F-actin as compared to the wild-type cells. When developed together with wild-type cells, lrrA
-cells were unable to move to the apical tip and sorted preferentially to the rear and lower cup regions. These results indicate that LrrA involves in cytoskeleton remodeling, which is needed for normal chemotactic aggregation and efficient cell sorting during multicellular morphogenesis, particularly in the formation of apical tip.
Key words: Leucine rich repeats (LRRs), Gene knockout, Cell adhesion, Cytoskeleton remodeling, Multicellular morphogenesis, Dictyostelium discoideum
INTRODUCTION
Leucine-rich repeats (LRRs) are short consensus sequence motifs present in many proteins with diverse functions and subcellular localizations. They appear to be generally involved in protein-protein interactions (Kobe and Deisenhofer, 1994; Kobe and Deisenhofer, 1995). LRRs motif-containing proteins not only participate in many biologically important processes, such as signal transduction, cell adhesion, disease resistance and innate immune response (Buchanan and Gay, 1996), but also involve in cell polarization (Bilder and Perrimon, 2000), apoptosis signaling (Inohara et al., 1999; Inohara and Nunez, 2001), mammalian development (Tong et al., 2000a;
Tong et al., 2000b) and cytoskeleton remodeling (Xu et al., 1997; Wu et al., 2000).
LRRs are usually present in tandem with the number of repeats among 1–30 (Buchanan and Gay, 1996). The most common length of a LRR is 24 residues, but repeats containing between 20 and 29 residues have been described (Buchanan and Gay, 1996). There is a distinctive subgroup of LRRs that are 23 amino acids in length instead of 24, and which contain additional consensus residues, especially proline (Fig. 1). These proteins have in common an ability to associate with the Ras family of signalling GTPases (Buchanan and Gay, 1996), such as the middle-repetitive repeat region in Saccharomyces cerevisiae adenylyl cyclase (Cyr1p) mediates interaction of the cyclase with RAS proteins (Field et al., 1990; Suzuki et al., 1990), and the LRR protein SUR-8 in
Caenorhabditis elegans and mammals acts as a scaffold and forms a complex with Ras and Raf
(Sieburth et al., 1998; Li et al., 2000).The cellular slime mould Dictyostelium discoideum grows as a unicellular amoeba, but undergoes a relatively simple multicellular development. During early aggregation stage, amoebae move chemotactically towards cAMP, make contact, and join into streams that in turn collect into hemispherical mounds of up to 105 cells (Devreotes, 1989; Firtel, 1995; Chen et al., 1996; Parent and Devreotes, 1996). Within each multicellular assembly amoebae differentiate autonomously and randomly into prespore and prestalk cells (Early et al., 1995; Firtel, 1995;
Firtel, 1996; Shaulsky and Loomis, 1996). The prestalk cells then move differentially to the apex of the mound, where they form a tip that acts as an organizing center (Rubin and Robertson, 1975;
Williams et al., 1989; Clow and McNally, 1999; Kellerman and McNally, 1999; Nicol et al., 1999;
Clow et al., 2000; Firtel and Meili, 2000). This tip elongates and falls over to form a migrating slug, or pseudoplasmodium, within which prestalk and prespore cells organize along an anterior-posterior axis pattern. In response to environmental signals, the slug undergoes culmination, resulting in the formation of a mature fruiting body containing terminally differentiated spores and stalk cells (Gross, 1994; Parent and Devreotes, 1996; Aubry and Firtel, 1999).
During tip formation and subsequent morphogenesis, cell sorting is mediated by differential chemotaxis to cAMP via similar chemotaxis pathways and differential cell adhesion systems (Traynor et al., 1992; Reymond et al., 1995; Firtel and Meili, 2000; Dormann et al., 2000;
Verkerke-van Wijk et al., 2001). Therefore, interfering with cAMP signaling by disrupting a prestalk cell specific cAMP receptor subtype 2 (CAR2) (Saxe III et al., 1993), overproducing the secreted form of cAMP phosphodiesterase (Traynor et al., 1992), or disrupting genes encoding
components involved in cytoskeleton remodeling, such as F-actin cross-linking proteins (Witke et
al., 1992), myosin heavy chain (Traynor et al., 1994), myosin II regulatory light chain (Clow et al., 2000) and limB (Chien et al., 2000), blocks development at the mound stage. Similarly,
disrupting genes encoding components involved in either cell-type determination or differential cell sorting, such as tipA (Stege et al., 1997), as well as involved in cell-cell adhesion, such aslagC (Dynes et al., 1994; Wang et al., 2000; Kibler et al., 2003) and dtfA (Ginger et al., 1998),
arrests development prior to formation of the apical tip.To identify novel genes involved in pattern formation of multicellular development in D.
discoideum, we searched genomic and cDNA databases (All Dictyostelium BLAST Search
[http://dicty.sdsc.edu/]) for homologues of S. cerevisiae Cyr1p, whose LRRs motif is essential for interaction with Ras proteins (Field et al., 1990; Suzuki et al., 1990). We identified a novel protein constituted entirely of tandem repeats of the LRRs motif. Analysis of an lrrA null mutant indicates that LrrA plays a decisive role in multicellular morphogenesis, especially in apical tip formation.MATERIALS AND METHODS Cell and molecular biology methods
Cell culture, development and transformation of Dictyostelium discoideum cells, Southern, Northern and Western blotting, and lacZ reporter analysis have all been described previously (Chang et al., 1995; Chang et al., 1996; Huang et al., 2004). Molecular cloning and analysis approaches are standard as described by Sambrook et al. (1989) and Ausubel et al. (1998).
Cellular location of LrrA protein
The complete lrrA coding sequence (encoding amino acids 1-510) and a mutant version with the leucine zipper motif deleted (deleting amino acids 197-321) were created by PCR from the full-length lrrA cDNA with the appropriate primers and were cloned into the pAct15-GFP plasmid. The resulting constructs contained the wild-type or mutated lrrA coding sequence fused in-frame with the DNA sequence for the green fluorescent protein (GFP-C3) (Crameri et al., 1996) under the control of the actin 15 promoter and actin 8 terminator. These constructs were used for transformation of wild-type Ax2 and lrrA- cells by electroporation, selecting for resistance to G418.
Generation of lrrA null mutants
To effectively target the lrrA locus in the D. discoideum genome, we created two lrrA knockout constructs, BglII-KO and SnaBI-KO (see Supplementary data, Suppl. Fig. 1A) as described previously (De Lozanne, 1987). Constructs were made containing 1.2 kb (BglII-KO) and 1.6 kb (SnaBI-KO) of lrrA genomic DNA with a blasticidin S-resistance cassette (Bsrr) inserted into the lrrA-coding sequence in the same orientation in each construct, so that its strong actin 8 termination sequence blocked any transcriptional read through. Transformants were then plated on SM-agar with K. aerogenes as a food source and developed. Colonies that displayed
aberrant developmental morphology were picked from the SM-agar plates and recloned. The insertional mutants obtained were analyzed by Southern and Northern blotting to verify disruption of the lrrA gene.
Complementation by transformation
The complete lrrA coding sequence (encoding amino acids 1-510) was generated by PCR from the full-length lrrA cDNA with the appropriate primers and cloned into the pAct15-GST plasmid (Huang et al., 2004). The resulting construct contained the wild-type lrrA cDNA fused in-frame with DNA for glutathione S-transferase (GST) under the control of the actin 15 promoter and actin 8 terminator. The constructs, act15-lrrA-gst and act15-gst, were used for complementation of lrrA null mutant SnaBI-KO using electroporation and selection for resistance to G418.
Cell-substratum adhesion assay
The cell-substratum adhesion assay was adopted from Vogel (1987) and Chen and Katz (2000). Exponentially grown cells were harvested and washed three times with Sorensen buffer, and resuspended to 1×106 cells/ml in the same buffer. Four ml of this suspension was incubated in 50 ml glass cell culture flasks on a gyratory shaker at 120 rpm for 10 minutes at room temperature. The cells were incubated for a further 40 minutes without shaking to allow them to adhere. After that the flasks were agitated gently for 3 minutes at 60 rpm and the supernatants were transferred to a test tube. Non-adherent cells in each supernatant were determined using a hemacytometer.
Cell agglutination assay
The cell agglutination assay was performed as described by Varney et al. (2002).
Exponentially grown cells were harvested and washed three times with KK2 buffer, and resuspended to 3×106 cells/ml in the same buffer. Two ml of the suspension was transferred to a plastic Falcon 2059 15-ml test tube (BD Biosciences, San Jose, CA), and left for 6 hours at 22oC on a rotary wheel set to 45 rpm. Samples were then removed from the tubes with a Pasteur pipette and overlaid onto a borosilicate cover slip for photography.
F-actin staining by Alexa Fluor 488-conjugated phalloidin
For F-actin staining, vegetative cells from axenic culture or agglutination-competent cells were deposited onto glass cover slips for 10 minutes, fixed in 3.7% formaldehyde solution for 10 minutes, permeabilized in 0.2% Triton X-100 solution for 5 minutes, and stained with Alexa Fluor 488-conjugated phalloidin solution (Molecular Probes, Eugene, OR) for 20 minutes. The amount of F-actin was analyzed by flow cytometry. The flow cytometry measurements were performed at a FACSCaliburTM flow cytometer (BD Biosciences, San Jose, CA).
Dunn chamber chemotaxis assay
The chemotactic migration assay of D. discoideum cells was assessed by directly
observation and recording of cell behavior in stable concentration gradients of chemoattractant, cAMP or folic acid, using the Dunn chemotaxis chamber (Weber Scientific International Ltd., Teddington, UK) (Zicha et al., 1991; Webb et al., 1996; Allen et al., 1998). Chemoattractants added to the outer well of the apparatus diffuse across the annular bridge to the inner blind well of the chamber and form a gradient. In these experiments, the outer well of the chamber was filled with developing buffer containing 10 μM of cAMP or 100 μM of folic acid and the concentric inner well with only developing buffer. Coverslips with cells were inverted onto the Dunn chamber and cell migration was observed through the annular bridge between the concentric inner and outer wells.
Aggregation in submerged monolayers
Exponentially grown cells were harvested and washed three times with aggregation buffer (pH6.2). Four ml of the cell suspension was plated in 5-cm tissue culture dishes (Nalge Nunc International, Rochester, NY) to a final density of 2 x 105 cells/cm2. Cells were incubated at 22oC in a humid box.
Accession number
The DDBJ/EMBL/GenBank accession number for the lrrA gene is AF200466 and for the
lrrA promoter is AF388909.
RESULTS
Identification of the leucine rich repeat protein LrrA
By searching the expressed sequence tag (EST) database of Dicty_cDB (http://www.csm.biol.tsukuba.ac.jp/cDNA/database.html) with the Saccharomyces cerevisiae adenylyl cyclase (Cyr1p) amino acid sequence (Kataoka et al., 1985), we identified a cDNA clone FCL-AC05, which has homology to the Cyr1p LRR motif. The cDNA contains one long open reading frame of 1530 bp that encodes a predicted protein of 510 amino acids with a calculated molecular mass of 57 kDa. It contains 19 tandem repeats of the LRR motif (amino acids 31-470), including a putative leucine zipper motif (amino acids 198-219) (Fig. 1). The full-length cDNA includes 284 bp of 5’-untranslated sequence and 71 bp of 3’-untranslated sequence. Sequencing the genomic DNA revealed a single intron interrupting the coding sequence of lrrA (data not shown).
Alignment of the high scoring segments obtained from a BLAST search of the non-redundant NCBI database (http://www.ncbi.nlm.nih.gov/BLAST/) using the deduced amino acid sequence of the isolated cDNA coding region revealed that the putative product displayed weak similarity to SUR-8, which is a positive regulator of Ras signaling that enhances MAP kinase activation and forms a complex with Ras and Raf (Sieburth et al., 1998; Li et al., 2000).
Since the predicted protein was composed almost entirely of LRR motifs, the gene was designated as lrrA. Searching the non-redundant NCBI database, as well as the D. discoideum genomic and cDNA databases (All Dictyostelium BLAST Search; http://dicty.sdsc.edu/) with the
lrrA nucleotide sequence failed to reveal any other related genomic matches, indicating that lrrA
is a unique gene.Analysis of the lrrA gene
The temporal expression pattern of lrrA during development was determined by extracting RNA at various times of development and hybridizing with full-length lrrA cDNA. lrrA encodes a single transcript of 1.6 kb that is substantially expressed during vegetative growth. We observed that lrrA expression increased upon starvation, peaked at 6-9 hours of the aggregation stage, and declined abruptly from 16 hours of development (Fig. 2A).
To identify the spatial pattern of lrrA expression during development, we isolated and sequenced the lrrA promoter region including the partial coding sequence of the upstream clcA gene (AF414428), and made a reporter construct with the Escherichia coli lacZ gene under its control. A strain harboring this construct was developed on KK2 buffered-agar, fixed, and stained with X-gal. All cells stained strongly during early development. However, the pattern of expression in first fingers and early culminates became progressively decreased in the staining cells. In fruiting bodies, both the spore and stalk cells exhibited weak staining with X-gal (data not shown).
Amino acid sequence analysis indicated that LrrA did not contain any putative targeting sequences or transmembrane domains, suggesting that LrrA is a cytoplasmic protein. To localize LrrA within the cell, constructs driven by the actin 15 promoter were made with either full-length
lrrA or using a mutant with deleted leucine zipper motif fused in-frame with the highly sensitive
C3 version of the green fluorescent protein (GFP) (Crameri et al., 1996). Localization of the GFP fusion protein in both the act15-lrrA-gfp and act15-lrrAΔ -gfp transformants was uniform
throughout the cells at all times during development (Fig. 2B). These results where consistent with LrrA being a cytosolic protein.Disruption of the lrrA gene
To investigate the function of LrrA protein during D. discoideum growth and development, two independent lrrA knockout strains were generated specifically (see Materials and Methods).
Disruption of the lrrA gene was confirmed by Southern blot (see Supplementary data, Suppl. Fig.
1B) and Northern blot analyses using an upstream lrrA DNA fragment as a probe. No transcripts were found in both the BglII-KO and SnaBI-KO mutants (data not shown). Efficiency of the homologous recombination with both the BglII-KO and SnaBI-KO targeting constructs was approximately 30 percent. All of the isolated mutants displayed identical phenotypes. The lrrA- cells grew normally in association with K. aerogenes on SM-agar plate and in liquid axenic medium (data not shown). During development, the cells aggregated and formed mounds with the similar timing as that of the wild-type cells, but the mounds failed to form apical tips both on bacterial lawns (data not shown) and on KK2 agar (Fig. 3). However, the loose mounds formed by
lrrA
- cells were significantly larger than those formed by the wild-type cells (Fig. 7A).To confirm that the phenotype was caused by disruption of lrrA, we transformed lrrA- cells with an lrrA expression construct fused in-frame with the glutathione S-transferase (GST), under
the control of the actin 15 promoter. The results revealed that only the expressed LrrA-GST fusion construct restored the ability of lrrA null cells to develop normally and produce mature fruiting bodies of essentially wild-type appearance (Fig. 3), consistent with a fully functional LrrA-GST fusion. Expression of the LrrA-GST fusion protein was verified by Western blot analysis using anti-GST antibody (see Supplementary data, Suppl. Fig. 2).
Effects on cell adhesion and cytoskeletal F-actin
The earliest detectable phenotypic trait in the mutant cells was their weak adhesion to the surfaces of plastic petri dishes, as revealed by their detachment upon gentle pipetting or even suspension in the axenic medium without any attachment to the surface (data not shown). To investigate this phenotypic trait directly, we measured their adhesion to the substratum and to other cells. The cell substratum adhesion assay quantifies the ability of amoebae to attach to a glass surface (Vogel, 1987; Chen and Katz, 2000). Wild-type and lrrA- cells were allowed to attach to the bottom of glass cell culture flasks prior to gentle and brief agitation. The non-adherent cells were then counted. Wild-type cells adhered more than did the lrrA- cells (Fig.
4A).
Microscopic examination of vegetative cells growing in plastic petri dishes for 24 hours revealed that wild-type cells displayed an elongated and polarized appearance, while lrrA- cells exhibited a rounded and nonpolar morphology (Fig. 4B). To examine this difference directly, we stained the actin cytoskeleton in wild-type and lrrA- cells from axenic culture with Alexa Fluor 488-conjugated phalloidin. In wild-type cells, the majority of F-actin was recruited into the macropinocytic crowns whereas in lrrA- cells the F-actin was enriched in cell surface projections as microspikes (Fig. 4C). To determine more precisely the levels of F-actin, the amount of fluorescence-stained F-actin was analyzed using a fluorescence-activated cell sorter. The levels of F-actin in the lrrA- cells were markedly elevated with respect to the wild-type cells (Fig. 4D).
These results indicated that vegetative lrrA- amoebae were defective in organization of the actin cytoskeleton.
When D. discoideum cells were washed free of growth medium, resuspended in non-nutrient buffer, and shaken in suspension, large cell agglomerates formed (Varney et al., 2002). The agglomerates formed by lrrA- cells starved in KK2 buffer for 6 hours were significantly smaller and looser than those formed by wild-type cells (Fig. 4E). Microscopic examination of the lrrA- cells showed that they were rounded and had many microspikes around their periphery, and appeared not to be polarized, suggesting of an aberrant organization of the actin cytoskeleton. To examine this idea directly, we stained the actin cytoskeleton in wild-type and lrrA- cells with Alexa Fluor 488-conjugated phalloidin. F-actin was observed to be highly localized to the anterior leading edge and to a lesser degree in the posterior region of polarized agglutination-competent wild-type cells (Fig. 4F). In contrast, lrrA- cells possessed many F-actin-enriched microspikes around the periphery of the cells (Fig. 4F). To determine more precisely the levels of F-actin, the amount of fluorescence-stained F-actin was analyzed using a fluorescence-activated cell sorter. The levels of F-actin in the lrrA- cells were dramatically elevated with respect to the wild-type cells (Fig. 4G), indicating that aggregation competent lrrA-
cells were markedly defective in the regulation of F-actin organization.
Effects on chemotactic response
It is known that cAMP is especially active as a chemotactic agent during the aggregation stage and shows relatively little activity during the vegetative growth. To analyze the effect of
lrrA mutation on chemotactic migration at the aggregation stage, we examined the chemotactic
responsiveness of wild-type and lrrA- cells to gradients of cAMP after 6 hours of starvation in shaken suspension without or with addition of 100 nM cAMP pulses every 6 minutes. The chemotactic responsiveness to cAMP was observed in wild-type aggregating cells whereas lrrA- cells were totally unresponsive to gradients of cAMP (Fig. 5A). Similar results were also observed when chemotaxis assays were conducted on aggregating cells that had been pulsated with 100 nM cAMP for 6 hours (Fig. 5B). This defective in chemotactic migration is consistent with the observed F-actin distribution and cellular morphology of lrrA- cells.In D. discoideum cells, reorganization of the actin cytoskeleton is essential for cellular motility in response to chemotactic agents. During vegetative growth, amoebae are chemotactic to folic acid, which is specifically secreted by bacteria and is used in food seeking (Pan et al., 1972; Pan et al., 1975). To assess the effect of lrrA mutation on cellular motility at the vegetative phase, we examined the chemotactic responsiveness of wild-type and lrrA- cells from axenic culture and starved for 6 hours in shaken suspension to gradients of folic acid. Wild-type vegetative amoebae exhibited strongly chemotactic responses to gradients of folic acid at concentration 100 μM whereas lrrA- cells were totally unresponsive to gradients of folic acid (Fig.
6A). Similar results were also observed when chemotaxis assays were conducted on cells that had been starved for 6 hours in shaken suspension (Fig. 6B). The results were consistent with the chemotactic properties to gradients of cAMP observed during aggregation stage.
Effects on multicellular morphogenesis
To analyze in detail the effect of lrrA null mutation on multicellular development, we characterized several aspects of the development of lrrA- cells. Firstly, we examined aggregation of the cells at different cell densities on KK2 agar. The lrrA- cells aggregated efficiently even at very low densities whereas wild-type cells were delayed in their aggregation, and produced larger loose mounds. The mutant cells never formed streams at any cell density (Fig. 7A). In addition, in the submerged monolayer aggregation assay, lrrA- cells did not polarize properly, and exhibited severe impairment in chemotaxis (Fig. 7B). In contrast, the wild-type cells formed streams of migrating cells joined head to tail as they moved in towards the aggregation center, which was emitting pulses of the chemoattractant cAMP (Fig. 7B).
These results suggested that lrrA- cells were impaired in cAMP signaling during early aggregation. To examine this possibility, wild-type and lrrA- cells were pulsed with 30 nM cAMP for 6 hours to mimic the normal oscillatory pulses of cAMP that occur during early aggregation, and then were plated on non-nutrient agars. Unlike the response seen in wild-type cells, the lrrA- cells formed aggregates, but still arrested at the mound stage without the formation of apical tip (data not shown).
Next, we examined the developmental phenotype of Ax2 and lrrA- cells in mixtures with various ratios. The chimeric aggregates were able to form apical tips and mature fruiting bodies but the size of the fruiting bodies decreased dramatically when half of the cells in the mixtures were mutant cells (Fig. 8A). In contrast, formation of the tipless aggregates increased significantly in the numbers and sizes with respect to the ratios of mutant cells increases, indicating that disruption of the lrrA gene results in sorting out of mutant from wild-type cells during aggregation. These results suggested that lrrA- cells either failed to co-aggregate with wild-type cells or, if co-aggregating, were unable to be rescued by wild-type cells.
To examine the ability of lrrA- cells to sort and form specific structures in these chimeric organisms, we tagged mutant cells with the constitutively expressed reporter construct act15-gfp.
Most of the gfp+ mutant cells were found at the periphery of the mound. Few were found inside the mound, and no GFP-expressed cells were observed in the apical tip domain (Fig. 8B), indicating that most of the lrrA- cells were excluded from cell sorting in the mound. During the post-aggregative stage, the mutant cells sorted preferentially to the rear of the slug and lower cup region of spore head, and tended to be lost from the rear of standing and migrating slugs (Fig. 8B).
We confirmed these results using the lacZ reporter tagged lrrA- cells. The spatial pattern of mutant cells in chimeric organisms with wild-type cells was similar to that observed using GFP labeled lrrA- cells (see Supplementary data, Suppl. Fig. 3). In addition, when mixed with an excess of wild-type cells, very few of the lrrA- detergent- and heat-resistant spores were formed when spore viability was assayed (<3%; data not shown).
Effects on developmental gene expression
To investigate why lrrA- cells could aggregate to form loose mounds but failed to form streams, we examined the expression of the aggregation-stage genes aca (aggregation adenylyl cyclase; Pitt et al., 1992; Pitt et al., 1993; Kriebel et al., 2003), car1 (cAMP receptor 1; Klein et
al., 1988; Sun and Devreotes, 1991), pde (cAMP phosphodiesterase; Lacombe et al., 1986; Faure et al., 1988; Faure et al., 1990; Hall et al., 1993), cadA (calcium-dependent cell adhesion
molecule; Wong et al., 1996; Yang et al., 1997) and csA (contact site A; Noegel et al., 1986;Desbarats et al., 1992). Northern blots of RNAs extracted from the wild-type and lrrA- cells at various times during development showed that the time of appearance of transcripts of the early genes aca, car1 and pde was delayed by roughly 6 hours in the mutant and their expression level was markedly reduced (Fig. 9A), indicating that lrrA- cells were impaired in cAMP signaling during early aggregation.
The initial expression of cadA was similar in wild-type and mutant cells, but expression thereafter differed, with maximal levels being attained at nine hours in wild-type cells and at 12 hours in mutant cells. In wild-type cells, cadA expression was down regulated after 9 hours, whereas expression remained elevated in lrrA- cells (Fig. 9A), possibly because of the arrest of the lrrA- cells at the loose mound stage. In lrrA- cells, however, the level of csA expression was slightly reduced compared with that of wild-type cells, and the kinetics of induction was delayed by roughly 6 hours. In wild-type cells, csA expression was down regulated after 6 hours but remained elevated in mutant cells, likely due to the arrest of the mutant cells at the mound stage
(Fig. 9A). These results indicated that the defect of streaming in lrrA- cells could not be ascribed to the failure to express cell adhesion molecules, such as DdCAD-1 and csA.
To examine post-aggregative cell-type differentiation, we analyzed the expression of the cell-specific prestalk and prespore genes, ecmA and psA (Ceccarelli et al., 1987; Jermyn et al., 1987; Early et al., 1988a; Early et al., 1988b). In lrrA- cells, ecmA and psA expression was delayed by roughly 4 hours and their level of expression was greatly decreased (Fig. 9B), again pointing to very limited post-aggregative development.
DISCUSSION
In this study, we identified and analyzed the biological function of novel protein, LrrA, in D.
discoideum. LrrA consists almost entirely of a series of nineteen 23-amino acid LRRs that
constitute more than 85% of the total amino acid sequence of the protein. No other functional modules apart from a single putative leucine zipper motif are present. The consensus residues, PxxIGxLxxLxxLxLxxNxLxxL, in all 19 repeats strongly resemble the LRRs in the proteins Cyr1p and SUR-8, which mediate interactions of both proteins with Ras proteins (Field et al., 1990; Suzuki et al., 1990; Sieburth et al., 1998; Li et al., 2000). The existence of such repeats and of additional consensus residues in particular proline suggests that the LrrA protein may function in a manner analogous to a Ras interacting protein.D. discoideum expresses a large number of Ras proteins with a wide range of functions
during vegetative growth and development (Chubb and Insall, 2001; Wilkins and Insall, 2001;Lim et al., 2002). For instance, the small GTPase RasG protein may control the actin cytoskeleton and play a role in adhesion (Tuxworth et al., 1997). Cells expressing constitutively active RasG[G12T] show increased cell-substrate adhesion (Chen and Katz, 2000). In addition, the developmental expression of constitutively active RasD[G12T] or RasG[G12T] results in multi-tipped aggregates, which do not undergo further morphogenesis (Reymond et al., 1986;
Jaffer et al., 2001). Furthermore, recent studies have identified a novel RasG-interacting protein (RIP3) whose function is required for both chemotaxis and cAMP signaling (Lee et al., 1999). In view of the well-established relation between LRRs and Ras proteins, we tested whether LrrA can function as a scaffold protein in Ras signaling pathways. Using the yeast two-hybrid system, we examined the possible interaction between LrrA and RasD[G12T] or RasG[G12T]. We found no indications of such an interaction (S.-Z. Chen, unpublished). While this suggests that LrrA functions independently of interaction with Ras proteins, we cannot exclude the possibility that it interacts with some other Ras protein.
As a novel protein, LrrA clearly plays a decisive role in multicellular morphogenesis, especially in the formation of apical tip. The defect in tip formation in the lrrA- cells is significant as this structure serves as the signaling center in the mound, and is essential for differentiation and morphogenesis to proceed. Tip formation is a process of differential cell movement in which prestalk cells sort and accumulate to form the anterior domain of the multicellular structure (Durston and Vork, 1979; Williams et al., 1989; Jermyn et al., 1996; Vasiev and Weijer, 1999).
How the tip is formed is still a mystery. Only a handful of genes are defective in tip formation,
such as null mutations in cAR2 (Saxe III et al., 1993), limB (Chien et al., 2000), myosin II (De Lozanne and Spudich, 1987; Knecht and Loomis, 1987; Clow et al., 2000), and dtfA (Ginger et
al., 1998). The lrrA
- mutant defect is similar to that of limB null mutant in that they both appear to extend excess actin-rich microspikes and are defective in aggregation (Chien et al., 2000).However, there are differences in the mound morphology and the timing of aggregation; the limB- mounds are of a normal size but there is a delay in their formation. Thus, LrrA has a distinct role in mound and tip formation.
Formation of a multicellular structure in D. discoideum requires cell-cell adhesion. During early development, there are EDTA-sensitive and EDTA-resistant cell-cell adhesions. The former is mediated by DdCAD-1 (Brar and Siu, 1993; Wong et al., 1996) and the latter by csA (Siu et al., 1985). The earliest detectable phenotypic trait in lrrA- cells is a defect in cell-substratum adhesion.
Presently, cell adhesion analyses revealed that lrrA- cells are adhesion defective. Northern blot analysis of cell adhesion molecules showed that the expression level of cadA and csA in lrrA- cells is roughly similar to that of the wild-type, but the expression kinetics of both genes is markedly delayed. These results indicate that lrrA- cells are capable of aggregating to form larger loose mounds, but are incapable of aggregating tightly to form an apical tip to organize the subsequent morphogenesis, rather than to the inability to express cell adhesion molecules such as DdCAD-1 and csA. In addition, microscopic examination of single, aggregation stage cells demonstrated that lrrA- cells do not become polarized and have defects in actin organization by extending more F-actin enriched microspikes. This abnormal cell shape may reduce the ability to make physical contacts and again contribute to its developmental phenotype. These results indicate that LrrA plays an important role in both adhesion and cytoskeleton remodeling during early development in D. discoideum.
In conclusion, our results clearly indicate that LrrA is not needed for cell growth but is required for effective adhesion to the substratum and to other cells, which is absolutely essential for the formation of apical tip and subsequent developmental morphogenesis. This is entirely consistent with the primary function of the LRR motifs to provide a versatile structural framework for the protein-protein interactions (Kajava, 1998; Kobe and Kajava, 2001). Our preliminary analyses from a comparative protein structural modeling analysis (SWISS-MODEL,
the GlaxoSmithKline, Geneva, Switzerland;
http://www.expasy.ch/swissmod/SWISS-MODEL.html) and a fully automated protein structure meta prediction system (3D-Jury, http://BioInfo.PL/Meta; Ginalski et al., 2003; Ginalski and Rychlewski, 2003) indicate that the LRR motif in the LrrA protein resembles the structure of LRRs in Listeria monocytogenes internalin (InlA), which mediates bacterial adhesion and invasion of epithelial cells in the human intestine through specific interaction with its host cell receptor E-cadherin (Schubert et al., 2001; Schubert et al., 2002), suggesting that LrrA might function as a scaffold in protein-protein interaction (T.-L. Cheng, unpublished). To elucidate the biochemical function of the LrrA protein in the cytoskeleton remodeling during multicellular morphogenesis, it will be useful to identify protein(s) that interact with it.
ACKNOWLEDGMENTS
We thank the Dictyostelium cDNA project in Japan for kindly providing the original cDNA clone FCL-AC05. This work was supported by grants from the National Science Council of Taiwan, ROC (to Wen-Tsan Chang).
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