國立臺灣大學生命科學院生態學與演化生物學研究所 碩士論文
Institute of Ecology and Evolutionary Biology College of Life Science
National Taiwan University Master Thesis
以物種分布模式預測台灣北部兩種攀蜥的共域區 並檢視形態置換現象
Examining the Pattern of Character Displacement of Two Sympatric Agamid Lizards in Northern Taiwan by Species
Distribution Model
陶善達 Shan-Ta Tao
指導教授:林雨德 博士 Advisor: Yu-Teh K. Lin, Ph.D.
中華民國102年6月
June, 2013
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誌謝
這篇論文的完成首先必須感謝林雨德老師在過去這三年半之間耐心的指導,以及三位口 試委員李培芬老師、林思民老師、陳賜隆博士在口試期間給予的指教與建議,讓論文的呈現 更臻完整。
在這段期間中,有許多人的協助使得本篇研究可以順利完成。首先要感謝師大草魚實驗 室的林思民老師以及實驗室成員:阿傑、龍哥、展蔚、彥博、芳神、阿平……等人在這段期 間,除了提供詳近採樣的資訊以供參考,也讓我可以更進一步的學習有關兩爬的知識,也提 供了我進入學術研究的訓練機會;也要感謝小蛇與阿宏提供的野外資訊。台大空間生態研究 室的李培芬老師以及怡慧學姊,感謝在這段期間內教導我對於地理資訊系統的相關知識與操 作,以及資料的分析與判讀,也提供了很多分析上的想法;感謝承恩學長,在野外採樣資訊 上的提供以及陪伴,對於共域點的資訊與分析給予了不少建議;感謝欽國學長在研討會的期 間與我討論變數的分析與選擇,讓我在後續分析中不至於茫然失措。感謝動物園的陳賜隆博 士,給予我機會在動物園內進行調查,同時也告知許多非常有用的分布資料。感謝台大動物 生態研究室的威廷以及艾陵,在野外採樣上給予的大力協助;感謝已畢業的邵閔學長及徵葳 學姊提供研究上的想法;感謝淑蕙學姊、菡芝學姊、佳倩、柏翰、貝珊、允光、友志、文皓、
雨珊、丞雅、哲豪、威森、慶賀、蟲子,若沒有你們在精神上的支持與陪伴,我也無法如此 專注的完成這篇研究。感謝許許多多的好朋友提供分析與想法上的建議,以及你們實質與精 神上的支持。
感謝這片大自然賜予我進行研究的機會,在這個過程當中如有因採集過程的疏失造成傷 害的生物,在此致上歉意,所有的資訊我都會善加利用,並妥善保存。最後也要感謝我的母 親與妹妹大力支持我繼續碩士生涯,在這麼長的時間中,始終願意支持我走下去。
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摘要
形態置換假說:當形態相似的物種共存於同一群聚時,同一物種於共域區的族群會在一 個或多個形態上產生分化。透過形態上差異的增加,可降低對於限制性資源的種間競爭強度。
斯文豪氏攀蜥(Japalura swinhonis)與黃口攀蜥(Japalura polygonata xanthostoma)皆有分布在台 灣北部地區。這兩個同屬種有相似的外觀型值與生態習性,但在巨觀棲地上有所差異。我使 用兩物種在巨觀棲地上有所差異的變數建構各物種的分布模式,預測兩物種的潛在共域區,
並由潛在共域區的資訊選擇樣區檢視兩物種的形態置換現象。物種分布模式的結果顯示對這 兩個物種出現機率影響最大的兩項因子分別是到人為土地利用密集區的距離以及森林面積,
同時預測的結果讓我得以確認四個共域區作為後續檢視形態置換現象之用。對相同物種而 言,四個共域區中有三個發現其與鄰近的非共域區在頭部相關的外觀型值顯著的變小。分析 結果也發現對共域區內的族群而言,與咬合力有關的外觀型值在確實有發現明顯的形態置換 現象;但與最大衝刺速度較有相關的外觀型值在共域區的種間差異反而降低了。形態置換現 象可能同時受到種間競爭與天敵捕食壓力的影響,因而降低兩物種在共域區的種間差異。
關鍵字:斯文豪氏攀蜥、黃口攀蜥、棲位、物種分布模式、形態置換
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Abstract
Character displacement hypothesis states: when species with character similarity coexist in the same community, the population in sympatric location would displace in one or more characters.
The increased differences in character space would reduce the strength of inter-specific competition for limited resources. Both Japalura swinhonis and Japalura polygonata xanthostoma occur in northern Taiwan. The two congeners have similar morphology and ecology, yet different
macro-habitats. I applied species distribution model to identify environmental features that describe their differences in macrohabitat use, and predict the potential contact zone of the two species. Then use the latter to examine the pattern of character displacement. The results of species distribution modeling showed the distance to human-use area and total area of forest contribute the most to the distribution of the two species. The models allowed me to successfully locate four main regions of species coexistence. I found evidence for character displacement in most sympatric locations of Japalura swinhonis and Japalura polygonata xanthostoma. In four of the sympatric locations I surveyed, three of them showed significant intra-specific differences in their morphology between sympatric and allopatric locations. The head related parameters were consistently smaller for both species. While inter-specific difference of bite force related characters were greater in the sympatric than allopatric locations, characters related to sprint speed were more similar in the sympatric locations. Character displacement may be effect by inter-specific competition and predation risk in sympatric location, therefore, the characters related to sprint speed would be more similar.
Keywords: Japalura swinhonis、Japalura polygonata xanthostoma、niche、species distribution model、character displacement
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Contents
誌謝……….. i
摘要…….……….. ii
Abstract ……..…..………..…….. iii
Introduction……….……….……….. 1
Materials and Methods…...……….………. 5
Pilot Survey………..………... 5
Field Survey for Species Distribution Modeling………... 6
Species Distribution Modeling………... 6
Identifying Potential Contact Zone……….. 9
Field Sampling for Character Displacement Analyses………. 10
Morphometric analyses………...…11
Result…..……….………....…………..……….….15
Pilot Survey………..………... 15
Field Survey for Species Distribution Modeling………... 15
Constructing Species Distribution Models………... 15
Identifying Potential Contact Zone……….. 18
Field Sampling for Character Displacement Analyses………. 18
Morphometric analyses………...…19
Discussion……….……….………21
Species Distribution Modeling……….21
The Pattern of Character Displacement………22
Conclusion……….………....……….………27
Reference.……….……28
Table……….……33
Figure……….………71
v
Appendix..………..82
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Contents of Tables
Table 1. Micro-habitat conditions of male and female Japalura swinhonis or
Japalura polygonata xanthostoma……….………...33
Table 2. The proportion of vegetation type in the study area, and the number of each type sampled.……….34 Table 3. The mean (±1sd) of 11 environmental variables each in 1km*1km cells with
Js-only, Jpx-only, both species, or neither species………....35
Table 4. A comparison among different occurrence types in 11 environment variables based on one-way ANOVAs………..………....36 Table 5. Pairwise Pearson’s correlation coefficient values between pairs of 11
environmental variables………..…….…..37 Table 6. Mean and median values of model performance and the contribution and
importance of each environmental variables for the 10 best suitability models for Japalura swinhonis……….……….38 Table 7. Mean and median values of model performance and the contribution and
importance of each environmental variables for the 10 best suitability models for Japalura polygonata xanthostoma……….……….……39 Table 8. The number of lizards measured at each sampling location…...…....……40 Table 9. The number of Japalura swinhonis and Japalura polygonata xanthostoma
per km per survey at each sympatric location………...41 Table 10. The mean (±1sd) value of each morphometric parameter for each
treatment………42 Table 11. The mean (±1sd) value of each morphometric parameter of Japalura
swinhonis males at individual locations………43
Table 12. The mean (± 1sd) size of each morphometric parameter of Japalura
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swinhonis females at individual locations………...……..…..44
Table 13. The mean (± 1 SD) size of each morphometric parameter of Japalura polygonata xanthostoma males at individual locations………..…………45
Table 14. The mean (± 1 SD) size of each morphometric parameter of Japalura polygonata xanthostoma females at individual locations………...………46
Table 15. A comparison between sympatric and allopatric male populations in 12 standardized morphometric parameters based on one-way ANOVAs with block………47 Table 16. A comparison between sympatric and allopatric female populations in 12
standardized morphometric parameters based on one-way ANOVAs with block………48 Table 17. The comparison of two species at different locations of region A in males’
standardized morphology………49 Table 18. The comparison of two species at different locations of region A in
females’ standardized morphology.………50 Table 19. The comparison of two species at different locations of region B with
males’ standardized morphology...….………51 Table 20. The comparison of two species at different locations of region B with
females’ standardized morphology….………52 Table 21. The comparison of two species at different locations of region C-I (C1, C2 and D1) with males’ standardized morphology..………53 Table 22. The comparison of two species at different locations of region C-I (C1, C2 and D1) with females’ standardized morphology…...………54 Table 23. The comparison of two species at different locations of region C-II (C1,
C2 and D2) with males’ standardized morphology………55
Table 24. The comparison of two species at different locations of region C-II (C1,
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C2 and D2) with females’ standardized morphology……….…56 Table 25. The comparison of two species at different locations of region C-III (C1,
C3, D1) with males’ standardized morphology…..………57 Table 26. The comparison of two species at different locations of region C-III (C1,
C3, D1) with females’ standardized morphology...………58 Table 27. The comparison of two species at different locations of region C-IV (C1,
C3, D2) with males’ standardized morphology..………59 Table 28. The comparison of two species at different locations of region C-IV (C1,
C3, D2) with females’ standardized morphology..……….…60 Table 29. The comparison of two species at different locations of region C-V (C2,
C4, D1) with males’ standardized morphology..………61 Table 30. The comparison of two species at different locations of region C-V (C2,
C4, D1) with females’ standardized morphology..……….…62 Table 31. The comparison of two species at different locations of region C-VI (C2,
C4, D2) with males’ standardized morphology..………63 Table 32. The comparison of two species at different locations of region C-VI (C2,
C4, D2) with females’ standardized morphology..……….…64 Table 33. The comparison of two species at different locations of region C-VII (C3,
C4, D1) with males’ standardized morphology..………65 Table 34. The comparison of two species at different locations of region C-VII (C3,
C4, D1) with females’ standardized morphology..……….…66
Table 35. The comparison of two species at different locations of region C-VIII (C3,
C4, D2) with males’ standardized morphology..………67
Table 36. The comparison of two species at different locations of region C-VIII (C3,
C4, D2) with females’ standardized morphology..……….…68
Table 37. Summary of significant intra-specific difference in morphometric
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characters between sympatric and allopatric populations…...……...……69 Table 38. A list of morphometric parameters of males and females in different region
that showed character displacement………....……...……70
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Contents of Figures
Figure 1. Concept map of the current study ………..…………...….71 Figure 2. Japalura occurrence in 90 surveyed cells in northern Taiwan…………...72 Figure 3. Japalura occurrence in 120 cells………....73 Figure 4. The relationship between probability of species occurrence and the
distance to human-inhabited area………....…...74 Figure 5. The relationship between probability of species occurrence and average
elevation………..75 Figure 6. The relationship between probability of species occurrence and the total
area of forest………..…....…..76 Figure 7. The relationship between probability of species occurrence and the mean
precipitation of breeding season…………...…77 Figure 8. A simplified map of occurrence probability for Japalura swinhonis in the
study area………...…….78 Figure 9. A simplified map of occurrence probability for Japalura polygonata
xanthostoma in the study area...………...…..79
Figure 10. Potential contact zones of Japalura swinhonis and Japalura polygonata xanthostoma………...……80 Figure 11. Sampling locations for examining the pattern of character displacement
of Japalura swinhonis and Japalura polygonata xanthostoma...………..81
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Contents of Appendices
Appendix I. Micro-habitat conditions of female and male Js or Jpx.………..82 Appendix II. A comparison among different occurrence types in 11 environment
variables based on one-way ANOVAs………...………83 Appendix III. Comparison between sympatric and allopatric populations in 12
standardized morphometric parameters……….……...84 Appendix III-1. A comparison between sympatric and allopatric male
populations- full ANOVA tables.. ….……….…. ……….…84 Appendix III-2. A comparison between sympatric and allopatric female
populations- full ANOVA tables…. …..………85
Appendix III-3. The comparison of two species at different locations of region A
with males’ standardized morphology- full ANOVA tables.. ….…. …………86
Appendix III-4. The comparison of two species at different locations of region A
with females’ standardized morphology- full ANOVA tables….…. …………87
Appendix III-5. The comparison of two species at different locations of region B
with males’ standardized morphology- full ANOVA tables.. ….…. …………88
Appendix III-6. The comparison of two species at different locations of region B
with females’ standardized morphology- full ANOVA tables….…. …………89
Appendix III-7. The comparison of two species at different locations of region
C-I with males’ standardized morphology- full ANOVA tables.. ….…. ……..90
Appendix III-8. The comparison of two species at different locations of region
C-I with females’ standardized morphology- full ANOVA tables.. …... ……..91
Appendix III-9. The comparison of two species at different locations of region
C-II with males’ standardized morphology- full ANOVA tables.. ….….……..92
Appendix III-10. The comparison of two species at different locations of region
C-II with females’ standardized morphology- full ANOVA tables.. …... …….93
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Appendix III-11. The comparison of two species at different locations of region
C-III with males’ standardized morphology- full ANOVA tables.. ….….…….94
Appendix III-12. The comparison of two species at different locations of region
C-III with females’ standardized morphology- full ANOVA tables.. …... ……95
Appendix III-13. The comparison of two species at different locations of region
C-IV with males’ standardized morphology- full ANOVA tables.. ….….…….96
Appendix III-14. The comparison of two species at different locations of region
C-IV with females’ standardized morphology- full ANOVA tables.. …... ……97
Appendix III-15. The comparison of two species at different locations of region
C-V with males’ standardized morphology- full ANOVA tables.. …..….…….98
Appendix III-16. The comparison of two species at different locations of region
C-V with females’ standardized morphology- full ANOVA tables.. …... .……99
Appendix III-17. The comparison of two species at different locations of region
C-VI with males’ standardized morphology- full ANOVA tables.. ….…...….100
Appendix III-18. The comparison of two species at different locations of region
C-VI with females’ standardized morphology- full ANOVA tables.. …... …..101
Appendix III-19. The comparison of two species at different locations of region
C-VII with males’ standardized morphology- full ANOVA tables.. ….….…..102
Appendix III-20. The comparison of two species at different locations of region
C-VII with females’ standardized morphology- full ANOVA tables.. …... ….103
Appendix III-21. The comparison of two species at different locations of region
C-VIII with males’ standardized morphology- full ANOVA tables.. ….…….104
Appendix III-22. The comparison of two species at different locations of region
C-VIII with females’ standardized morphology- full ANOVA tables.. …...…105
Appendix IV. Sampling effort at each sampling location.……...………..106
1
Introduction
In The Struggle for Existence, Gause (1934) stated that two species with similar
ecological requirements cannot coexist in the same community indefinitely. It was
later named ”the Principle of Competitive Exclusion” (Hardin 1960). To coexist,
species must partition sufficiently on one or more niche axes such as time, space, or
resource use, thus increase the strength of intra-specific competition relative to
inter-specific competition (Amarasekare, 2003). Sympatric species, particularly
closely related species, with similar character features may potentially face greater
competitive pressure due to the overlap in resource usage. Character displacement is a
mechanism by which competing sympatric species can enhance the segregation of
niche from each other. It is a situation when two species are allopatric, they may be
similar to each other; when they co-occur, they would “displace” one or more
characters and become dissimilar (Brown & Wilson, 1956). The characters can be a
suit of traits in morphology, behavior, physiology, or life-history. The displacements
are assumed to be genetically based. They define the evolution of character difference
that would reduce the resource use overlap and interspcific competition as “ecological
character displacement”.
The classic example of character displacement was found in Darwin’s finches.
Geospiza fortis diverged in beak size from a co-existing competitor, G. magnirostris,
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when they experienced intensive competition for food during years of severe drought
(Grant & Grant, 2006). Losos (1994) in another classic case of character displacement
demonstrated that with the absence of ecologically similar specie, anole species
tended toward an optimal body size. In multi-species communities, competitive
interactions forced species deviate from the optimal size. Sympatric members of the
same eco-morph type became different greatly in sizes. The populations alter their
resource use in the presence of ecologically similar congeners. The study by Pfennig
& Murphy (2000) on Plains (Spea bombifrons) and Mexican (Spea multiplicata)
spadefoot toads showed that most tadpoles of former species became carnivorous
while the latter species remained mostly omnivorous in the sympatric breeding ponds.
Recently, Pfennig et al. (2006) showed that the two species could only coexist where
breeding ponds had sufficient food resources. That is, only when a habitat was
suitable for both species to coexist, would character displacement occur. In addition,
they argued that since demographic changes occur on a shorter time scale than genetic
changes, character divergence should be a plastic response initially. If the resource
remained sufficient to allow both competitors to persist, then the divergence may
become genetically canalized (Pfennig & Pfennig, 2012). My research project
examines the ecological character displacement of two sympatric agamid lizards in
northern Taiwan.
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The two lizard species, Japlura swinhonis and Japalura polygonata xanthostoma,
inhabit low elevation area (below 1500m) in northern Taiwan. Japalura polygonata
xanthostoma (Jpx, hereafter) distributes mostly in northern Taiwan, while Japlura
swinhonis (Js, hereafter) populates the whole island (Hsiang, 1997; Ota, 1991). The
two congener (Hsiang 1997) species have similar morphology and ecology. There was
little difference between species in daily active patterns, breeding seasons, home
range sizes, diets, and perch usage (Lin & Lu, 1982; Kuo et al., 2007; Yang, 2009).
Previous studies (Lue et al., 1987; Zeng & Gao, 2004) have shown that there is often
only one species occur in surveyed locations. Js frequently appears in relatively open,
human-disturbed habitats, such as city parks or school campuses. Jpx, on the other
hand, appears mostly in mountain foothills. Despite the perceived (not formally
quantified) differences in macro-habitat use, anecdotal information suggested that the
two species co-occur at a number of locations in northern Taiwan. At such a
sympatric location, in comparison with two allopatric locations, Yang (2009) found
apparent character displacement between the two agamid lizards. That is, the
dissimilarity in morphology was greater at the sympatric than allopatric locations. It
became clear that an investigation on the pattern of character displacement at a large
spatial scale would provide insights on the distribution of and competition between
the two species.
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As an initial step, I employed the species distribution modeling technique
(Ferrier & Guisan, 2006) to identify environmental factors that may contribute to the
distribution patterns of each species in northern Taiwan. A species distribution model
combines the presence-only or presence-absence data with environmental variables to
predict species occurrence probability over an area (Elith & Leathwick, 2009). The
idea is based on Hutchinson’s description of a species niche as an “n-dimensional
hyper-volume” (Hutchinson, 1957). I then used the species distribution models to
predict the locality of allopatry or sympatry, particularly the latter, of the two agamid
lizards. Sample locations of allopatry or sympatry were surveyed and confirmed of
their status. Finally, I sampled lizards in several regions with both allopatry or
sympatry populations to examine the pattern of character displacement. Overall, my
research aims are three folds: (1) To identify the environmental variables contribute to
the distribution of Js and Jpx; (2) To determine the locations of allopatry or sympatry
of Js and Jpx; (3) To reveal the pattern of character displacement between Js and Jpx.
Finally, I discuss the evolutionary implication of character displacement on the
co-existence of Js and Jpx. Figure 1 gives the concept map of the current study.
5
Materials and Methods
1. Pilot Survey
I conducted a pilot survey during 2009~2010 in order to have some idea about the
habitat requirements of Js and Jpx. It later helped me select meaningful environmental
factors for species distribution modeling. I visited 30 locations in northern Taiwan.
Other than noted the macro-habitat type of each location, such as urban area and
foothill, when a Js or Jpx was spotted, I measured temperature and relative humidity
in situ with a hand-held weather station. I also measured canopy coverage by taking a
vertical bottom-up picture of the canopy with a digital camera with a 35-mm lens. The
images were processed with software Image J (ver.1.44, Abramoff, Magalhaes, &
Ram, 2004) to calculate the coverage of canopy. One-way ANOVAs were applied to
compare between four sex-species categories. The inflation of p values due to tests on
multiple parameters was corrected with the Benjamini-Hochberg FDR-controlling
adjustment (a sequential Bonfferoni correction). Comparisons with significant test
results were followed by post hoc pairwise comparisons using the Scheffé’s tests. The
signicance level of all statistical tests was set at p < 0.05. I reported values as
mean±1sd. All statistical tests used in this thesis followed the same procedures unless
stated otherwise.
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2. Field Survey for Species Distribution Modeling
The range of study area covered the Taipei City, the New Taipei City, and the
north-east corner of Taoyuan county (24° 43’ 40” ~ 25° 17’ 58” N, 121° 15’ 09” ~
122° 00̕’ 18” E). I divided the area into 2777 1-km-by-1-km grid cells (Fig. 2) that
matched the 1-km resolution of all environmental data obtained (see below). I
stratified random sampled 90 cells according to the proportions of different vegetation
types in study area (Table 2). For each sampled cells, I surveyed agamid lizard
populations along a ~500m transect. Each transect was walked in a relaxed strolling
speed, and surveyed at least twice from May to July in 2012. Because the survey of
the 90 cells yielded 21 Js-only and 41 Jpx-only cells (see Results), I also used
presence-only data from 30 non-sampled cells that came from pilot survey in
2009~2010 (see previous section) to increase sample sizes. Overall, a total of 38 and
54 cells provided information for Js and Jpx, respectively, for constructing the species
distribution models (Fig. 3 and Table 3). I did not include information from any
sympatric cells for model construction.
3. Species Distribution Modeling
I developed a species distribution model for each species using the software
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Maxent (v.3.3.3, Phillips, et al. 2006). The software uses the maximum entropy
approach (a machine-learning algorithm) that combines presence-only data and
environmental variables to generate species distribution models (Phillips, 2004;
Cunningham et al., 2009). The maximum entropy approach performed relatively well
with small sample sizes comparing to other methods, such as GARP and Random
Forest, that also use presence-only data (Papeş & Gaubert, 2007; Hernandez et al.,
2008; Kumar & Stohlgren, 2009; Bean et al., 2012).
I chose 11 environmental variables (Table 3) that likely affect Agamid lizard
distribution to construct models. Ten of the variables (with abbreviations) were
readily available from the GIS database in the NTU Spatial Ecology Laboratory, last
updated in 2008. They included: mean altitude (DTM_MEAN); number of forest
patches (FOR_PATCH), total area of forest (FOR_AREA), mean temperature during
May-Oct. (Japalura breeding season) (T_BREEDING), accumulated monthly mean
temperature - 5℃ (5℃ is assumed the minimum temperature required for plant
growth, Kira, 1945a and b) (WARMTH), mean precipitation during May-Oct.
(P_BREEDING), direct light sky hours (DLS_HOUR), whole light sky
(WLS_HOUR), distance to 65% human land-use area (D2_H_USE), shortest distance
to Taipei City (D2_CITY), distance to the nearest road (DIS_ROAD) (Lee et al.,
1997). In addition, I calculated the distance to human-use area (D2_H_USE). It was
8
defined as the distance to the center of the nearest cell in which the proportion of
human-used area is higher than 65% (Lee et al., 1997). The parameter was different
from the distance to city (D2_CITY), which was defined as the distance to the boarder
of city. The former variable would give a better indication of the distance from one
cell to a highly developed area. I applied one-way ANOVAs to compare among cells
with Js-only, Jpx-only, both species, or neither species for each environmental
variable (Table 3 and 4). I then examined the collinearity of the remaining variables
by Pearson’s correlation coefficient. If a correlation coefficient was ≧0.60 between a
pair of two variables (Arif et al., 2007; Martínez-Freiría et al., 2008; McCormack et
al., 2010; Gormley et al., 2011; Heinänen et al., 2012; Martin et al., 2012), only one
of the variable would be selected for the species distribution model (Table 5).
All selected environmental variables were entered into Maxent software as one
CSV file. I randomly assigned 75% of the data (90 of 120 cells) as training data,
another 25% (30 cells) as testing data by bootstrapping. I chose the 10 best models out
of 30 replicates to calculate the mean and median values of testing data AUC and
omission rate as model performance indices; and to establish the 10-percentile logistic
threshold for species occurrence criteria (Hernandez et al., 2006; Phillips et al., 2006).
Generally, low omission rate (<0.1) and high AUC value (> 0.7) indicate excellent
model performance (Medley, 2010; Phillips et al., 2006). Probability of occurrence
9
for each cell was calculated from the median of all 30 replicate models in order to
reduce the effect of extreme values. Nevertheless, the qualitative results were the
same regardless of using 10 or 30 models. A map of occurrence probability was
produced for each species by using ArcGIS 9.3 (Environmental System Research
Institute, Redlands, USA).
4. Identifying Potential Contact Zones
Combining the resulting species distribution models for Js and Jpx each provided
prediction for locations of sympatry, i.e., contact zones. Locations with high
suitability for both species inferred high probability for supporting the coexistence of
Js and Jpx. I employed the Natural-Breaks classification scheme followed by an
algorithm proposed by Jenks (1967) performed in ArcGIS 9.3 to classify all cells. If
the suitability value of a cell did not reach the 10-percentile logistic threshold, it was
given a 0. Cells with suitability values higher than 10-percentile logistic threshold
were classified into three classes: 1, 2, and 3 according to their suitability values. The
classification procedure was conducted for both species separately, and a simplified
map of occurrence probability was produced for each species. The Natural-Breaks
method maximizes the difference between classes. There were 16 possible status for
each cell, from [0,0] being neither species would occur to [3,3] being both species
10
would very likely occur. To reduce the number of classes, I regrouped classes to
indicate the probability of co-occurrence: [0,0],[0,1], [1,0], [0,2], [2,0], [0,3], [3,0]
cells were grouped as N (for 0 probability); [1,1], [1,2], [2,1], [1,3], [3,1] cells were
grouped as L (for low probability); [2,2] cells remained as M (for medium
probability); [3, 2], [3, 2], [3, 3] cells were grouped as H (for high probability). This is
a more conservative approach to identify the contact zones of Js and Jpx.
5. Field Sampling for Character Displacement Analyses
After identifying contact zones, I set out to sample lizards for character
displacement analyses. I established 4 sampling regions (Fig. 10), both Regions A and
B had Js-only cells, Jpx-only cells, and Js-Jpx sympatric cells; Region C had no
Jpx-only cells, and Region D had no Js-only cells and Js-Jpx sympatric cells. Detail
information of the 4 region (Fig. 11) follows: Region A- Yinghua Ecological Park
(25° 02’ 41” N, 121° 025’ 25”E, Sympatric), Mt. Guanyin (25° 07’ 29” N, 121° 025’
29”E, Jpx-only), and Hutou Mountain Park (25° 00’ 30” N, 121° 19’ 35”E, Js-only);
Region B- Shuiguan Rd. Hiking Trail (25° 07’ 49” N, 121° 32’ 7”E, Sympatric),
Chinese Culture University (25° 08’ 05” N, 121° 032’ 18”E, Jpx-only), and
Junjianyan Hiking Trail (25° 07’ 35” N, 121° 31’ 00”E, Js-only); Region C- Taipei
City Zoo (24° 59’ 44” N, 121° 35’ 10”E, Sympatric), Chihnan Temple Hiking Trail
11
(24° 59’ 00” N, 121° 34’ 59”E, Sympatric), Xianjiyan Hiking Trail (24° 59’ 12” N,
121° 33’ 12”E, Js-only); and Mt. Fuzhou Hiking Trail (25° 01’ 03” N, 121° 33’ 10”E,
Js-only); Region D- Mt. Jinmian Hiking Trail (25° 05’ 08” N, 121° 34’ 48”E,
Jpx-only), and Neigou River Hiking Trail (25° 05’ 12” N, 121° 37’ 21”E, Jpx-only).
During survey, the total number of lizards I observed, the length of survey trail,
and the time-spent during each survey was recorded. I standardized the number of
individuals with the length of sampling trail. I arbitrarily determined 3 is the
minimum number of adult individuals for a population to be viable. For example,
Junjianyan Hiking Trail had 1,Jpx recorded. This location was considered Js-only
locations. Lizards were captured by hand or noose. For Js, male and female
individuals with snout-ventral length (SVL, hereafter) longer than 54- and 48-mm,
respectively, were considered adult; for Jpx, male and female had SVL longer than
45- and 44-mm, respectively, were considered adults (Yang, 2009). Of each captured
lizard, I recorded species, sex, conditions (parasite and injury), and morphometric
parameters (see Morphometric Analyses). Only information for adults entered
subsequent analyses.
6. Morphometric analyses
I measured body weight and the following morphological variables of lizards:
12
head length (HL, measured from quadrate to the tip of snout), head width (HW, the
distance between jaw joints on each sides), head height (HH, measured from lower
dentary to the parietal), snout-ventral length (SVL, measured from the cloacal
opening to the tip of snout), tail length (TL, measured from cloacal opening to the tip
of tail), right forelimb length (Flimb, measured from the upper arm joint to wrist),
right forelimb palm length (Fpalm, measured from wrist to the base of longest toe),
length of the longest toe of right forelimb (Fin, measured from toe base to tip, claws
were not included), right hindlimb length (Hlimb, measured from the upper leg joint
to ankle), right hindlimb palm length (Hpalm, measured from wrist to the base of
longest toe), length of the longest toe of right hindlimb (Toe, measured from toe base
to tip, claws were not included). Body length (BL) was obtained from the differences
between SVL and HL. Weight was measured to the nearest 0.1 g with a spring scale
(Pescola). Tail length was measured to the nearest 1 mm with a measuring tape. All
other morphological variables were measured to the nearest 0.1mm by a metal caliper.
I checked if outliers occurred. An individual was defined as an outlier if its two or
more morphometric parameters showed up as outliers in the outlier tests. I removed
these individuals from subsequent analyses.
I generated shape variables based on Mosimann’s method (Mosimann, 1970) as
described in Butler and Losos (2002) for each individual. I first calculated the general
13
size and head size. The general size (SIZE) was defined as the geometric mean of HL,
HW, HH, BL, TL, Flimb, Fpalm, Fin, Hlimb, Hpalm, and Toe, and head size (HEAD)
as the geometric mean of HL, HW, and HH. Each morphological variable was then
standardized by dividing it by SIZE. The standardized morphometric parameters
include: sHL, sHW, sHH, sBL, sTL, sFlimb, sFpalm, sFin, sHlimb, sHpalm, sToe,
sHEAD. Standardized parameters enter the following ANOVA analyses. Normality
tests were conducted prior ANOVA. The parameters failed the normality assumption
were nature-log transformed.
To compare the morphological characteristics between individuals in allopatric
and sympatric locations, I first applied a one-way ANOVA with block, followed by
Scheffé’s post hoc pairwise comparisons to examine the overall pattern. Region
served as blocks in this analysis. Because sexual dimorphism occurs in both Js and
Jpx (Kuo et al., 2009), males and females were analyzed separately. To examine
details within regions, I then applied a one-way ANOVA for each region, followed by
Scheffé’s post hoc pairwise comparisons. Since both Jpx-only locations of region D
were the closest allopatric sites of Japalura polygonata xanthostoma to the sympatric
locations in Region C, both regions were combined to examine the morphological
differences between sympatric and allopatric locations. Based on character
displacement hypothesis, characters with intra-specific difference in sympatric
14
location may indicate sympatric species diverged on these characters. The characters
with significant intra-specific difference between sympatric and allopatric location
were noted. For region C and D, each sympatric location compared with 4 sets of
allopatric location (two Js-only, C2 and C3 with two Jpx-only, D1 and D2),
respectively. The characters with significant intra-specific difference were noted only
when they showed statistical significance for over 3 among 4 sets of comparison. I
calculate the inter-specific difference of noted characters in sympatric and allopatric
location. I then applied a one-tailed Wilcoxon-Mann-Whitney test (a Wilcoxon
two-sample test) for comparison.
15 Results
1. Pilot Survey
The pilot survey showed there was no significant difference between Js and Jpx
in micro-habitat temperature (One-way ANOVA, F3, 234?=2.43, p=0.13) and canopy
coverage (F3, 234=0.76, p=0.52). However, the relative humidity was lower for Js than
Jpx micro-habitats (species effect, F3, 234=22.45, p = 0.0001, Table 1).
2. Field Survey for Species Distribution Modeling
Among the 90 cells I surveyed, there were 21 Js-only, 41 Jpx-only, 7 both species,
and 21 neither species cells (Fig. 2). After combining presence-only data from 30
non-sampled cells that came from the pilot survey, I had a total of 38 Js-only, 54
Jpx-only, 7 both species, and 21 neither species cells (Fig. 3). The information in the
Js-only and Jpx-only cells each was used for constructing the species distribution models for Js and Jpx, respectively.
3. Constructing Species Distribution Models
Individually, each of the 11 environmental variables had significant effects on
Japalura occurrence (Table 3). I selected 5 variables, including FOR_PATCH,
16
FOR_AREA, T_BREEDING, P_BREEDING, DLS_HOUR, according to the
Pearson’s correlation coefficient r ≧0.60 criterion. I also included DTM_MEAN and
P_BREEDING because the former variable was the only topological variable, and
P_BREEDING was related to relative humidity of microhabitat, which was a
significant micro-habitat variable (Table 1). Overall, 7 variables were selected (Table
5).
Model performance indices indicated that the mean and median of testing data
AUC for Js (Table 6) and Jpx (Table 7) were all higher than 0.8. None of the testing
data omission rates were higher than 0.0833 (Table 6 and 7). Together, they indicated
the resulting species distribution models would be accurate in predicting species
occurrence (Swets, 1988). The map of species distribution based on the models was
shown in Figure 8 for Js, and Figure 9 for Jpx. High values indicated high suitability,
thus high probability of occurrence. Results derived from mean or median values both
indicated that the environmental variables that affected Js occurrence were
FOR_AREA and D2_H_USE (Table 6). Total area of forest (FOR_AREA)
contributed ~70% in predicting Js occurrence, the greater the forest area, the lower
the probability of occurrence. Whereas, distance to 65% human land-use area
(D2_H_USE) contributed ~15%, the closer the distance to human-inhabit area, the
higher probability of occurrence. On the other hand, results derived from either mean
17
or median values indicated that 4 environmental variables affected Jpx occurrence:
FOR_AREA (~32% contribution), the greater the forest area, the higher the
probability of occurrence; D2_H_USE (~30% contribution), the closer the distance to
human-inhabit area, the higher probability of occurrence; P_BREEDING (~12%
contribution), the higher in breeding season precipitation, the higher probability of
occurrence, and DTM_MEAN (~10% contribution), the lower in elevation, the higher
probability of occurrence (Table 7). Overall, both species tend to occur in areas close
to human inhabitation. Yet, Js has stronger affiliation with human inhabitation than
Jpx does (Fig. 4). Both species tend to occur at low elevation. Yet, Js (0~200 m)
occurs at lower elevation than Jpx (100~400 m) does (Fig. 5). While microhabitat
analyses did not showed difference in preference for canopy coverage (Table 1),
species distribution modeling indicated Js prefers areas with low forest coverage, and
Js areas with high forest coverage (Fig. 6). It is likely that relative humidity that
associated with precipitation (Fig. 7) and forest coverage makes the difference.
During breeding season, Js occurs in areas with ~60% relative humidity, Jpx in areas
with ~70% humidity (Table 1). Js occurs in areas with mean breeding season
precipitation < 300mm (272.36 ± 44.19mm, Table 3), Jpx in areas with mean
breeding season precipitation > 250mm (315.01 ± 55.45mm, Table 3).
18 4. Identifying Potential Contact Zone
The median of 10 percentile logistic threshold calculated from the 10 best models
for Js and Jpx were 0.3247 and 0.2963, respectively. The probability of species
occurrence in a cell that did not reach those thresholds was given a 0 value. A total of
2647 cells were given 0. For Js, the ranges of percentiles for class 1, 2, & 3 were
0.3248~0.4384 (246 cells), 0.4384~0.5752 (198 cells), 0.5752~0.8112 (134 cells),
respectively; for Jpx, the ranges were 0.2964~0.4200 (429 cells), 0.4200~0.5644 (314
cells), 0.5644~0.8303 (209 cells), respectively. After applying the Natural-Break
method, I produced a simplified map of occurrence probability for each species (Fig.
8 and 9). Several potential contact zones of Js and Jpx were identified (Fig. 12). A
total of 130 cells had the potential of Js and Jpx co-occurrence. Among them, 12 cells
had high, 10 medium, and 108 low probabilities. I had survey information for all the
130 cells, and observed Js-Jpx co-occurrence (at least 3 adult individuals of each
species) in only 4 cells. However, I visited the 22 cells that had medium or high
probabilities. Only 3 cells I found indeed Js and Jpx co-occurrence. However, in 4 of
the other 19 cells, I found Js and Jpx co-occurrence in adjacent cells.
5. Field Sampling for Character Displacement Analyses
The number of lizards at each sampling location varied considerably (Table 8).
19
The number of Js and Jpx per km per survey at each sympatric location is given in
Table 9. Taipei City Zoo had very high density of Js, and Jpx had dwindled from
historic record (Kuo et al., 2007; Yang, 2009). Nevertheless, the colonization,
expansion, or extinction of Js and Jpx populations are an on-going dynamics. For
example, I recently (summer 2012) discovered the appearance of Js in Mt. Jinmian
Hiking Trail.
6. Morphometric analyses
I found several outlier individuals (Table 8). After removing outliers, the mean
(±1sd) value of each morphometric parameter of Js and Jpx males and females at
individual locations are given in Table 10~14. All regions combined, character
displacement was found in sHlimb (one-way ANOVA with block, treatment effect, F3,
180=72.82, P = 0.0024) for males (Table 15) but none for females (Table 16). There was no block (region) effect. Examining character displacement in different regions, I
found no evidence of character displacement (significant difference in a
morphometric character between sympatric and allopatric populations of a species) in
region B (Table 19 & 20). For region A, character displacement were found only in
female (Table 17 & 18). Female of Jpx showed significant smaller head height (sHH,
F3, 35=6.73, P = 0.0088), head size (sHEAD, F3, 35=123.43, P = 0.0001) and longer
20
length of hind-limb (sHlimb, F3, 35=14.26, P = 0.0001) (Table 18). For region C,
Taipei Zoo (C1) showed similar trend of in 4 sets of comparison, C-I~IV (Table
21~28). Male of Jpx had significant smaller head height (Table 21, 23, 25 and 27) and
head size (Table 21, 25 and 27); female of Jpx had significant smaller head height,
head size and longer body length and length of hind-palm (Table 22, 24, 26 and 28).
Chihnan Temple Hiking Trail (C4) also showed similar trend of in 4 sets of
comparison, C-V~VIII (Table 29~36). Female of Js had significant smaller head
height width (Table 30, 32, 34 and 36). Table 37 gives the summary of the evidence
of character displacement.
For those morphometric characters with significant intra-specific difference
between sympatric and allopatric location (Table38), the inter-specific differences
were not statistically greater in sympatric location in males (Z = 1.2259, P = 0.1101)
nor in females (Z = 0.7044, P = 0.2406).
21 Discussion
1. Species Distribution Modeling
My model showed high performance (AUC between 0.8~0.9) with relatively low
omission rate (< 0.1). The most contributed variables for the distribution of Js and Jpx
is the distance to human-inhabited area and the total forest area. In addition, mean
altitude and precipitation of breeding season also contribute to the distribution of Jpx.
The results showed these variables are useful in predicting the occurrence of these
two species, respectively. Js and Jpx are both arboreal species, the coverage of forest
is important to their occurrence. In general, Js showed higher probability closing to
human-inhabited area and lower forest coverage, while Jpx showed mostly in the
opposite. There is a rising probability of occurrence with relatively low forest
coverage of Jpx. One possible reason is that there are several cells were actually very
close to human-inhabited area. With 1-km resolution, the cells of mountain area
which are close to human-inhabited area may affect the prediction of Jpx occurrence.
The result of potential contact zone anticipation showed that among 22 cells with
medium to high probability of co-occurrence of Js and Jpx, only 7 were sympatric
distributed either at the exact cell or the adjacent cell. The target species may occur in
a relatively unsuitable habitat if the immigration from source population is large
22
enough (Holt, 1985; Pulliam & Brent, 1991). At the community level, these “sink”
habitats may contribute majority of species co-occurring area (Pulliam, 2000). The
result still provides me useful information of possible sympatric localities. It also
provide informations about the possible grouping for examining the character
displacement.
2. The Pattern of Character Displacement
Ecological character displacement was not consistently found in all sympatric
location I had surveyed. The population abundance of both species in sympatric
location may provide some insight. I did not find any intra-specific differences in
Shuiguan Rd. Hiking Trail (B1), which showed the lowest abundance of Js and Jpx.
Taipei Zoo (C1) showed the highest abundance of both species, which present most
significant pattern of character displacement. Previous studies showed the resource of
sympatric location must be limited so the strength of inter-specific competition would
force coexisting species to diverge in their characters (Grant, 1972; Dayan &
Simberloff, 2005). Location with low abundance of coexisting species may not reflect
the limitation of resources. Relative abundance of coexisting species may also
indicate possible mechanisms of species coexistence with character displacement.
Slatkin hypothesized two possible mechanisms: (1) for equally abundant species,
23
there are some differences in limiting resource. With small or even unmeasurable
differences can lead to significant displacements; (2) for one species more abundant
than another, there are no differences in their resource utility niche (Slatkin, 1980).
Previous study showed relatively equal abundant of Js and Jpx in Taipei Zoo (Kuo et
al., 2007). Pilot survey also suggested there is almost no difference in the
micro-habitat of Js and Jpx. Based on the information I had, former mechanisms
could be a more plausible explaination to the coexistence of Js and Jpx.
Ecological character displacement was found mostly in Jpx of Taipei Zoo.
Previous studies showed the demographic processes can account for the differences I
observed (MacArthur et al., 1967; May & MacArthur, 1972; Slatkin, 1980). Based on
the historical trend observed from previous studies (Kuo et al., 2007; Yang, 2009), the
population of Japalura swinhonis had increased during the past few years. The pattern
of morphological difference may be disturbed by the immigrant from allopatric
population.
The morphometric parameters with intra-specific difference were mostly about
head. This is the only consistent pattern among all sympatric populations (except
region B). There are several studies indicate that the head size has negative effect on
the sprint speed of lizards (Vanhooydonck & Van Damme, 1999; Peterson & Husak,
2006; Yang, 2009). Greater head size and head height may also indicate better bite
24
force (Herrel et al., 2006; Yang, 2009). For all sets comparisons of Taipei Zoo, I
found body length and length of hind-palm are consistently greater in sympatric
location. Previous studies showed that the characters of hind limb could affect the
sprint speed of lizards (Losos & Sinervo, 1989; Losos, 1990; Garland & Losos, 1994;
Van Damme et al., 1998). Body length could also affect on sprint speed (Beuttell &
Losos 1999; Losos 1990).
Despite there are pseudo replicates in my statistical analyses, the inter-specific
morphological difference is not greater in sympatric location for every character. The
inter-specific difference of head height in both sexes of Taipei Zoo (C1) and head
width in females of Chihnan Temple Hiking Trail(C4) is greater. However, the
inter-specific difference of head size in both sexes of Taipei Zoo (C1) is smaller.
Competition is not the only force could generate similar patterns of character
divergence (Taper & Case, 1992; Schluter, 2000). There are studies suggest that
predation could enhance the character divergence (Chiba, 1999; Rundle et al., 2003)
or alter the competitive interactions (Chase et al., 2002) of coexisting species. My
results suggest the character about maneuverability (e.g., length of hind-palm, head
size) of both species became similar when they coexist. The character which affect
bite force diverged in sympatric location. Based on previous morphological and
ecological studies, Losos defined all the anole lizards into different eco-morph types
25
(Losos, 2009). The characters of Js and Jpx were both similar to Trunk-ground or
Trunk-crown type. The sympatric locations are mostly relative open forest and close
to the mountain area. The occurrence of competitor with similar eco-morph type, the
pressure of predation on Js and Jpx may be more intense in the sympatric location,
especially from birds. Two species coexist with similar and enough species abundance,
the divergence cause by inter-specific competition could be enhanced by predation.
The apparent character displacement between Js and Jpx could be observed. Once the
strength of competition decreased, predation may force Js and Jpx tend to optimize
their maneuverability. Several studies showed reproduction could severely affect
locomotor performance of females (Seigel et al., 1987; Cooper, et al., 1990; Miles et
al., 2000) which may explain why most character differences were found in females
in my research.
Previous researches formalized six criteria for to ascertain the occurrence of
ecological character displacement: (1) the pattern of differences could not occur by
chance; (2) phenotypic differences should be genetic based; (3) the differences should
result from evolutionary shifting; (4)Morphological differences should related to
differences in resource use; (5) sympatric and allopatric locations should not differ
greatly in environmental features that would affect the phenotype; (6) there must be
independent evidence for competition (Schluter & McPhail, 1992; Losos, 2000;
26
Dayan & Simberloff, 2005). For the first criteria, I found consistent pattern of the
parameters about head were smaller in three of four sympatric locations. The pattern
of differences did not occur by chance. I did not examine second criteria in this
research. The genetic based of phenotypic traits is often difficult to prove (Dayan &
Simberloff, 2005). For the third criteria, when I examined the pattern of
morphological difference in Taipei Zoo (C1) and Chihnan Temple Hiking Trail(C4),
I set up four groups of compariosn for each sympatric location (C1: C-I~IV and C4:
C-V~VIII). The differences were consistently found in all sets of comparison for
every sympatric location, respectively. The differences I found should result from
evolutionary shifting. The fourth criteria had already been examined in previous study
(Yang, 2009). There are almost no differences were found between the macro- and
micro-habitat of Js and Jpx. The independent evidence for competition was already
confirmed in previous observations (Kuo et al., 2007; Yang, 2009).
27 Conclusion
My research demonstrates the usefulness of species distribution modeling in
species with ecological similarity. The results of modeling provide very useful
information about the potential sympatric locations of Js and Jpx. Among four
sympatric locations I surveyed, Taipei Zoo showed the most apparent character
displacement between Js and Jpx. Most morphological differences were found in
female of Jpx. The morphometric parameters about head are consistently smaller in
sympatric location. Smaller head indicate better sprint speed of lizards. Although I did
not examine whether the differences in morphology were genetic based, I do find
character displacement in the sympatric location of Js and Jpx. Competition and
predation could generate similar pattern of character divergence. Both of them were
frequency-dependent ecological process. Further research should consider the relative
abundance of coexisting species and the effect on competition and predation risk in
sympatric location.
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