卢永根、万常绍、张桂权 (1990). 我国三个野生稻种粗线期核型的研究. 中国 水稻科学 4:97-105.
闫素丽、安玉麟、孙瑞芬、李素萍 (2008). 染色体核型分析及染色体显微分离 技术研究进展.生物技术通报 4:70-77.
李文靜 (2002). 蝴蝶蘭屬植物核醣體 RNA 基因的選殖及實質定位. 國立台灣 大學植物學研究所碩士論文.
李思誼 (2006). 姬蝴蝶蘭開花時間相關基因(PeSOC1)之選殖與特性分析. 國立 成功大學生命科學研究所碩士論文.
李益豪 (2007). 核糖體RNA基因於七種蝴蝶蘭屬植物的分佈.國立台灣大學分子 與細胞生物學研究所碩士論文.
佘朝文、 张礼华、蒋向辉 (2012). 花生的荧光显带和 rDNA 荧光原位杂交核型 分析. 作物学报 38(4):754-759.
林晋寬、侯議翔、宮良政 (2008). 台灣蝴蝶蘭產業之技術發展軌跡:專利及品 種權分析. 5:1-14.
陳文輝 (2002).蝴蝶蘭的品種改良. 科學發展 351:32-39.
程祝宽、顾铭洪 (1994). 釉、粳稻及其杂种粗线期的核型分析. Acta Genetica Sinica 21:385-392.
程祝宽、颜辉煌、顾铭洪 (1999). 水稻染色体的长度顺序和编号问题. Hereditas 21:46-49.
彭欣羚 (2007). 利用數種重複性DNA序列的分布建立朵麗蘭的核型.國立台灣大 學分子與細胞生物學研究所碩士論文.
廖敏卿 (1990). 蝴蝶蘭栽培.台北.pp 1-95.
蔡奇助、莊畫婷 (2009). 遠緣雜交與分子遺傳鑑定技術在蝴蝶蘭育種之應用潛 力.農業生技產業季刊 17:37-45.
蔡奇助、莊畫婷 (2010). 搖曳生姿~蝴蝶蘭.行政院農業委員會高雄區農業改良 場.屏東.pp 1-112.
劉麗飛、張松彬 (2008). 植物細胞分子顯微技術. 國立臺灣大學生物技術研究 中心出版.
Achenbach UC, Tang X, Ballvora A, de Jong H and Gebhardt C (2010).
Comparision of the chromosome maps around a resistance hot spot on chromosome 5 of potato and tomato using BAC-FISH painting. Genome 53:103-110.
Arends JC (1970). Cytological observations on genome homology in eight interspecific hybrids of Phalaenopsis. Genetica 41:88-100.
Chang SB, Yang TJ, Datema E, van Vugt J, Vosman B, Kuipers A, Meznikova M, Szinay D, Lankhorst RK, Jacobsen E and de Jong H (2008). FISH
mapping and molecular organization of the major repetitive sequences of tomato. Chromosome research:16:919-933.
Chen CC, Chen CM, Hsu FC, Wang CJ, Yang JT and Kao YY (2000). The pachytene chromosomes of maize as revealed by fluorescence in situ hybridization with repetitive DNA sequences. Theoretical and Applied Genetics 101:30-36.
Cheng Z, Buell CR, Wing RA, Gu M and Jiang J (2001). Toward a cytological characterization of the rice genome. Genome Research 11:2133-2141.
Christenson EA (2001). Phalaenopsis: a monograph. (Oregon: Timber Press).
Danilova TV and Birchler JA (2008). Integrated cytogenetic map of mitotic
metaphase chromosome 9 of maize: resolution, sensitivity, and banding paint development. Chromosoma 117:345-356.
de Bustos A, Cuadrado A, Soler C and Jouve N (1996). Physical mapping of repetitive DNA sequences and 5S and 18S-26S rDNA in five wild species of the genus Hordeum. Chromosome Research 4:491-499.
de Jong JH, Fransz PF, Zabel P (1999). High resolution FISH in plants – techniques and applications. Trends Plant Science 4: 258–263.
Devi J, Ko JM, and Seo BB (2005). FISH and GISH: Modern cytogenetic techniques. Indian Journal of Biotechnology 4:307-315.
Dong F, Song J, Naess SK, Helgeson JP, Gebhardt C and Jiang J (2000).
Development and applications of a set of chromosome-specific cytogenetic DNA markers in potato. Theoretical and Applied Genetics 101:1001–1007.
Dressler RL (1993). Phylogeny and classification of the orchid family. (Cambridge University Press).
Findley SD, Cannon S, Varala K,Du J,Ma J, Hudson ME,Birchler JA and Stacey G (2010). A fluorescence in situ hybridization system for karyotyping soybean. Genetics 185:727-744.
Flavell RB, Bennett MD, Smith JB and Smith DB (1974). Genome size and the proportion of repeated nucleotide sequence DNA in plants. Biochemical Genetics 12: 257-268.
Fukui K, Nakayama S, Ohmido N, Yoshiaki H and Yamabe M (1998).
Quantitative karyotyping of three diploid Brassica species by imaging methods and localization of 45S rDNA loci on the identified chromosomes.
Theoretical and Applied Genetics 96:325-330.
He Y and Amasino RM (2005). Role of chromatin modification in flowing-time control. Trends Plant Science 10:30-35.
Heslop-Harrison JS and Schwarzacher T (2011). Organisation of the plant genome in chromosomes. The Plant Journal 66:18-33.
Hoshi Y, Plader W and Malepszy S (1998). New C-banding pattern for chromosome identification in cucumber (Cucumis sativus L.). Plant Breeding
117: 77–82.
Iovene M, Wielgus SM, Simon PW, Buell CR, and Jiang J (2008). Chromatin structure and physical mapping of chromosome 6 of potato and comparative analyses with tomato. Genetics 180:1307-1317.
Kao YY, Chang SB, Lin TY, Hsieh CH, Chen YH, Chen WH and Chen CC (2001). Differential accumulation of heterochromatin as a cause for karyotype variation in Phalaenopsis orchids. Annals of Botany 87:387-395.
Kao YY, Lin CC, Huang CH and Li YH (2007). The cytogenetics of Phalaenopsis orchids. In: Chen, W. H., and Chen, H. H. (eds) Orchid biotechnology. World Scientific, Singapore, pp 115-128.
Koo DH, Choi HW, Cho J, Hur Y and Bang JW (2005). A high-resolution karyotype of cucumber (Cucumis sativus L. ‘Winter Long’) revealed by C-banding, pachytene analysis, and RAPD-aided fluorescence in situ hybridization. Genome 48:534-540.
Kubis S, Schmidt T and Heslop-Harrison JS (1998). Repetitive DNA elements as a major component of plant genomes. Annals of Botany 82:45-55.
Lan T and Albert VA (2011). Dynamic distribution patterns of ribosomal DNA and chromosomal evolution in Paphiopedilum, a lady’s slipper orchid. BMC Plant Biology 11:126-141.
Li L and Arumuganathan K (2001). Physical mapping of sorted chromosomes 45S and 5S rDNA on maize metaphase and by FISH. Hereditas 134:141-145.
Lin CC, Chen YH, Chen WH, Chen CC and Kao YY (2005). Genome organization and relationship of Phalaenopsis orchids inferred genomic in situ hybridization. Botanical Bulletin of Academia Sinica 46:339-345.
Lin S, Lee HC, Chen WH, Chen CC, Kao YY, Fu YM, Chen YH and Lin TY (2001). Nuclear DNA contents of Phalaenopsis sp. and Doritis pulcherrima.
Journal of the American Society for Horticultural Science 126:195–199.
Liu C, Liu J, Li H, Zhang Z, Han Y, Huang S and Jin W (2010). Karyotyping in melon ( Cucumis melo L.) by cross-species fosmid fluorescence in situ hybridization. Cytogenetic and Genome Research 129:241-249.
Miller FP, Vandome AF and McBrewster J (2009). Karyotype. (VDM Publishing House Limited), pp 1-140.
Morales AG, Aguiar-Perecin MLR and Mondin M (2012). Karyotype characterization reveals an up and down of 45S and 5S rDNA sites in Crotalaria (Leguminosae-Papilionoideae) species of the section Hedriocarpae subsection Macrostachyae. Genetic Resources and Crop Evolution 59:277–288.
Mukai Y, Endo TR and Gill BS (1990). Physical mapping of the 5S rRNA multigene family in common wheat. Hereditas 81:290-29.
Murata M, Heslop-Harrison JS and Motoyoshi F (1997). Physical mapping of the 5S ribosomal RNA genes in Arabidopsis thaliana by multi-color fluorescence in situ hybridization with cosmid clones. The Plant Journal 12:31-37.
Peterson DG, Price HJ, Johnston JS and Stack SM (1996). DNA content of heterochromatin and euchromatin in tomato (Lycopersicon esculentum) pachytene chromosomes. Genome 39:77-82.
Rho IR, Hwang YJ, Lee HI, Lee CH and Lim KB (2012). Karyotype analysis using
FISH (fluorescence in situ hybridization) in Fragaria. Scientia Horticulturae 136: 95–100.
Richards EJ and Ausubel FM (1988). Isolation of a higher eukaryotic telomere from Arabidopsis thaliana. Cell 53:127-136.
Sadder MT, Ponelies N, Born U and Weber G (2000). Physical localization of single-copy sequences on pachytene chromosomes in maize (Zea mays L.) by chromosome in situ suppression hybridization. Genome 43:1081-1083.
Schmidt T, Schwarzacher T and Heslop-Harrison JS (1994). Physical mapping of rRNA genes by fluorescent in situ hybridization and structural analysis of 5S rRNA genes and intergenic spacer sequences in sugar beet (Beta vulgaris).
Theoretical and Applied Genetics 88:629-636.
Schwarzacher T and Heslop-Harrison P (2000). Practical in situ Hybridization.
(Oxford: Bios Scientific Publishers Limited), pp 1-203.
Shindo K and Kamemoto H (1963). Karyotype analysis of some species of Phalaenopsis. Cytologia 28: 390-398.
Singh RJ and Hymowitz T (1988). The genomic relationship between Glycine max (L.) Merr. and G. soja Sieb. and Zucc. as revealed by pachytene chromosome analysis. Theoretical and Applied Genetics 76:705-711.
Sumner AT (2003). Chromosomes organization and function. (Blackwell Science Limited).
Sweet HR (1980). The Genus Phalaenopsis. (California: Day Printing Corp).
Taketa S, Harrison GE and Heslop-Harrison JS (1999). Comparative physical mapping of the 5S and 18S-25S rDNA in nine wild Hordeum species and cytotypes. Theoretical and Applied Genetics 98:1-9.
Talia P, Greizerstein E, Quijano CD, Peluffo L, Fernandez L, Fernandez P,
Hopp HE, Paniego N, Heinz RA and Poggio L (2010). Cytological characterization of sunflower by in situ hybridization using homologous rDNA sequences and a BAC clone containing highly represented repetitive retrotransposon-like sequences. Genome 53:172-179.
Tang CY and Chen WH (2007). Breeding and development of new varieties in Phalaenopsis. Orchid biotechnology. World Scientific, Singapore, pp 1-22.
Tang X, Bao W, Zhang W and Cheng Z (2007). Identification of chromosomes from multiple rice genomes using a universal molecular cytogenetic marker system.Journal of Integrative Plant Biology 49:953-960.
Trask BJ (1991). Fluorescence in situ hybridization: applications in cytogenetics and gene mapping. Trends in Genetics 7:149-154.
Viana AJC and Souza MM (2010). Identification of the pattern of heterochromatin distribution in Passiflora species with C-banding. Genetics and Molecular Research 9:1908-1913.
Viotti A, Privitera E, Sala E and Pogna N (1985). Distribution and clustering of two highly repeated sequences in the A and B chromosomes of maize.
Theoretical and Applied Genetics 70:234-239.
Volpi EV and Bridger JM (2008). FISH glossary: an overview of the fluorescence in situ hybridization technique. BioTechniques 45:385-409.
Wang CJ, Harper L and Cande WZ (2006). High-resolution single-copy gene fluorescence in situ hybridization and its use in the construction of a cytogenetic map of maize chromosome 9. The Plant Cell 18:529-544.
Wang K, Guo W, Yang Z, Hu Y, Zhang W, Zhou B, Stelly DM, Chen ZJ, and Zhang T (2010). Structure and size variations between 12A and 12D homoeologous chromosomes based on high-resolution cytogenetic map in allotetraploid cotton. Chromosoma 119:255-266.
Xiong Z and Pires JC (2010). Karyotype and identification of all homoeologous chromosomes of allopolyploid Brassica napus and its diploid progenitors.
Genetics 187: 37-49.
Yu H, Liang H and Kofoid KD (1991). Analysis of C-banding chromosome patterns of sorghum. Crop Science 31:1524-1527.
Zhao X, Lu J, Zhang Z, Hu J, Huang S and Jin W (2011). Comparison of the distribution of the repetitive DNA sequences in three variants of Cucumis sativus reveals their phylogenetic relationships. Journal of Genetics and Genomics 38:39-45.
表 1. 螢光原位雜交反應使用的探針。
探針 來源 插入片段大小 標定抗原 標定方法 染色
1. 5S rDNA
2. 45S rDNA
3. Arabidopsis-type telomeric sequences
表 2. 姬蝴蝶蘭粗絲期染色體核型分析統計數據。
編號 細胞數a 總長度(µm) 相對長度(%) 真染色質(µm) 異染色質(µm) 長臂(µm) 短臂(µm) Arm Ratiob 中心節位置C 1 5 32.07 ± 5.49 7.82 ± 0.42 21.38 ± 4.58 10.69 ± 0.98 21.60 ± 5.33 10.47 ± 2.80 2.21 ± 0.90 sm 2 4 29.08 ± 3.03 7.46 ± 0.34 24.69 ± 2.64 4.39 ± 0.93 18.06 ± 1.62 11.02 ± 1.79 1.66 ± 0.22 m 3 5 29.43 ± 4.22 7.20 ± 0.21 23 ± 4.47 6.44 ± 0.75 17.73 ± 1.92 11.71 ± 3.20 1.59 ± 0.40 m 4 5 28.29 ± 2.83 6.96 ± 0.44 20.38 ± 2.11 7.91 ± 1.25 18.66 ± 2.99 9.62 ± 0.79 1.96 ± 0.43 sm 5 5 26.29 ± 4.77 6.43 ± 0.59 19.96 ± 4.05 6.33 ± 1.59 15.09 ± 2.17 11.19 ± 2.92 1.39 ± 0.26 m 6 5 24.56 ± 4.25 6.00 ± 0.51 19.11 ± 3.19 5.45 ± 1.44 16.48 ± 3.89 8.08 ± 1.21 2.07 ± 0.52 sm 7 5 24.75 ± 3.64 6.07 ± 0.59 16.79 ± 3.81 7.95 ± 1.94 16.67 ± 2.25 8.07 ± 1.77 2.11 ± 0.28 sm 8 5 25.50 ± 7.73 6.19 ± 1.22 17 ± 6.07 8.5 ± 1.91 17.39 ± 6.92 8.10 ± 2.45 2.33 ± 1.11 sm 9 5 21.70 ± 2.42 5.32 ± 0.07 15.94 ± 2.33 5.76 ± 0.69 15.17 ± 1.35 6.51 ± 1.90 2.51 ± 0.84 sm 10 5 21.62 ± 2.57 5.30 ± 0.16 15.22 ± 2.24 6.4 ± 0.49 14.47 ± 1.98 7.14 ± 1.31 2.07 ± 0.41 sm 11 5 19.01 ± 2.70 4.66 ± 0.25 10.49 ± 1.69 8.52 ± 1.25 11.20 ± 1.96 7.07 ± 2.57 1.86 ± 0.65 sm 12 5 19.83 ± 2.70 4.86 ± 0.22 13.39 ± 2.33 6.44 ± 0.61 10.72 ± 1.76 8.64 ± 0.88 1.29 ± 0.15 m 13 4 17.18 ± 4.18 4.04 ± 0.60 12.88 ± 4.07 4.3 ± 0.29 14.22 ± 3.33 3.68 ± 1.50 4.03 ± 0.66 st 14 5 18.20 ± 2.84 4.46 ± 0.36 13.29 ± 1.69 4.9 ± 1.32 13.00 ± 1.94 5.20 ± 1.26 2.50 ± 0.50 sm 15 5 16.51 ± 2.14 4.04 ± 0.10 9.28 ± 1.21 7.23 ± 1.12 9.33 ± 1.07 7.19 ± 1.16 1.31 ± 0.14 m 16 5 17.17 ± 3.03 4.20 ± 0.43 9.78 ± 2.79 7.39 ± 0.41 9.50 ± 1.66 7.67 ± 1.45 1.25 ± 0.12 m 17 5 16.74 ± 2.14 4.15 ± 0.74 10.40 ± 2.50 6.34 ± 0.59 11.95 ± 1.49 4.31 ± 0.80 2.81 ± 0.32 sm 18 5 15.56 ± 3.56 3.78 ± 0.39 8.63 ± 2.34 6.93 ± 1.35 9.50 ± 2.61 6.06 ± 1.10 1.56 ± 0.28 m 19 5 13.65 ± 2.07 3.34 ± 0.28 7.24 ± 1.41 6.41 ± 0.88 8.24 ± 1.88 5.40 ± 0.27 1.52 ± 0.29 m a. 供作分析的 5 個細胞中,其中 2 個細胞各只有 18 對染色體,分別缺少第 2 對及第 13 對,故細胞的樣本數為 4。
b. 臂比 arm ratio 數值係長臂(q) /短臂(p)所獲得。
c. 英文字縮寫: m: metacentric ; sm: submetacentric ; st: subtelocentric,係參考 Rho et al., (2012)文獻。
表 3. 姬蝴蝶蘭中期染色體長度統計分析。
表 4. 姬蝴蝶蘭相異細胞中內含 45S rDNA 訊號的染色體細部分析。
細胞 長度 真染色質 異染色質 長臂 短臂 Arm Ratio 中心節
1 16.54 12.86 3.68 13.36 3.18 4.2 st 2 18.45 12.54 5.91 12.19 6.26 1.95 sm 3 17.61 13.29 4.32 13.79 3.82 3.61 st 4 25.64 16.5 9.14 18.58 7.06 2.63 sm 5 21.09 13.29 7.8 16.03 5.06 3.17 st 6 19.06 13.23 5.83 14.57 4.49 3.24 st 7 19.61 14.49 5.12 14.93 4.68 3.19 st 8 10.06 7.8 2.26 6.79 3.27 2.08 sm 9 17.16 13.68 3.48 12.68 4.48 2.83 sm
平均 18.36 13.08 5.28 13.66 4.7 3.0 st
標準偏差 4.1 2.3 2.17 3.21 1.29 0.71
*表中長度、真染色質、異染色質與長短臂單位皆為 µm。
圖 1. 姬蝴蝶蘭粗絲期染色體型態觀察。(A) 以 1% Acetocarmine 染色觀察花粉 細胞染色體型態,細胞壁尚未破壞,可觀察到較完整的細胞結構;(B) 以光學 顯微鏡觀察染色體型態;(C) 將姬蝴蝶蘭粗絲期染色體以 DAPI 染色後,以螢 光顯微鏡 CCD camera 拍照收集圖像;(D) 以影像軟體編輯圖檔。Scale bar = 10 µm。
圖 2. 姬蝴蝶蘭粗絲期染色體模式核型圖(第一組核型)。以影像軟體處理後,呈 現完整的 19 對染色體,有些染色體收縮良好且染色均勻,能夠觀察到清晰的異 染色質結。染色體以 DAPI 作對比染色,箭頭所指之處為第 19 對染色體,是所 有染色體中長度最小者。Scale bar = 10 µm。
圖 3. 供作核型分析之細胞染色體圖。從製備完成的染色體玻片中挑選染色體完 整,異染色質清晰且染色體分散程度較均勻的細胞,以 PI 作對比染色,於螢光 顯微鏡下拍攝收集影像並進行圖檔的編輯,讓異染色質以及染色體型態更為清 楚。(A) 第二組核型;(B) 第三組核型;(C) 第四組核型;(D) 第五組核型。Scale bar = 10 µm。
圖 4. 觀察姬蝴蝶蘭單離染色體末端次級收縮區。箭頭所指的地方有一段尚未收 縮完全的染色體。染色體以 DAPI 作對比染色,Scale bar = 10 µm。
圖 5. 觀察姬蝴蝶蘭中期染色體型態。以 DAPI 作對比染色,於螢光顯微鏡下拍 攝並進行影像處理。圖中可發現中期染色體大小型態相似,有些染色體染色較 深。Scale bar = 1 µm。
圖 6. 以螢光原位雜交分別將 45S rDNA 與端粒序列定位在姬蝴蝶蘭染色體。
(A)、(B) 以 biotin-16-dUTP 標定 45S rDNA,再以 Rodamin 偵測,於相異細胞 中染色體的末端觀察到極為明顯的紅色訊號;(C) 以 dig-11-dUTP 標定 45S rDNA,再以 FITC 偵測,染色體的末端亦觀察到綠色訊號。藉由觀察 45S rDNA 可判斷衛星體的染色體。(D) 探針為阿拉伯芥型的端粒序列(TTTAGGG)n,以 Rodamin 紅色螢光偵測後發現單離染色體的末端皆出現微弱的訊號(箭頭處)。
染色體以 DAPI 作對比染色,Scale bar = 10 µm。
圖 7. 以雙標的螢光原位雜交將兩種重複性序列定位在姬蝴蝶蘭粗絲期染色體。
綠色訊號代表 45S rDNA,紅色訊號為(TTTAGGG)n,染色體以 DAPI 作對比染 色,Scale bar = 10 µm。
圖 8. 以螢光原位雜交將 5S rDNA 定位在姬蝴蝶蘭粗絲期染色體。以 FITC 偵 測螢光訊號,可發現到 5S rDNA 皆位於染色體的末端。染色體以 PI 作對比染 色。Scale bar = 10 µm。
圖 9. 獨特性序列 SOC1 基因利用螢光原位雜交定位在姬蝴蝶蘭粗絲期染色體。
(A) 以 FITC 偵測螢光,於粗絲期染色體上可觀察到明顯的綠色訊號,包含兩 個明顯的點以及一個較微弱的點,而圖檔上方染色間期也發現到一對明顯的訊 號,包含兩個清晰的點。(B) 相異細胞中觀察 SOC1 基因訊號。染色體以 DAPI 作對比染色。Scale bar = 10 µm。
圖 10. 獨特性序列 SOC1 基因定位在姬蝴蝶蘭單離的粗絲期染色體上。(A) 單 離染色體上觀察到 SOC1 的訊號,包含一個相當明顯的點以及兩個較微弱的點;
(B) 以影像軟體編輯圖檔,可發現到 SOC1 基因位於染色體短臂的真染色質上。
染色體以 DAPI 作對比染色。Scale bar = 10 µm。
圖 11. 姬蝴蝶蘭核型結構模式圖。
*. SOC1 基因距離第一對染色體短臂末端約 5.16 µm。
*. CMT(chromomethylase)基因位置係參考 林(2012) 論文,未發表。(CMT 基因距離第六對染色體長臂末端約 1.23 µm)。
*. EFS(Early Flowering in Short days)基因位置係參考 周(2012) 論文,未發表。(EFS 基因距離第十對染色體長臂末端約 1.13 µm)。