[PDF] Top 20 pKNOT v.2: the protein KNOT web server
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pKNOT v.2: the protein KNOT web server
... a pKNOT server, which provides a structural database of knotted proteins, analysis tools for detecting and analyzing knotted regions from structures as well as a Java-based 3D graphics viewer for ... See full document
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pKNOT: the protein KNOT web server
... format The web page of the pKNOT web server is shown in Figure ...2. The users can either type in the PDB ID or upload a structural file in the PDB ... See full document
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PCFamily: a web server for searching homologous protein complexes
... in the interfaces), functional modules, and the conserved interacting domains and Gene Ontology annotations of the ...that the PCFamily server can be useful for binding model ... See full document
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CELLO2GO: A Web Server for Protein subCELlular LOcalization Prediction with Functional Gene Ontology Annotation
... interaction. The other GO- slim terms ‘‘transmembrane transporter activity’’ in Molecular Function ontology and ‘‘cell motility’’ in Biological Process ontology appearing in one protein may associated with ... See full document
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PPISearch: a web server for searching homologous protein-protein interactions across multiple species
... of protein sequences, PPISearch is the first server that can identify homologous PPIs from annotated PPI databases and infer transferabil- ity of interacting domains and functions between homol- ogous ... See full document
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fastSCOP: a fast web server for recognizing protein structural domains and SCOP superfamilies
... After the structural domains and evolutionary super- families were recognized, the fastSCOP server allowed users to browse similar structures of these ...query, the server can identify ... See full document
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KinasePhos 2.0: a web server for identifying protein kinase-specific phosphorylation sites based on sequences and coupling patterns
... of the kinase-specific phos- phorylation sites. Herein, a new web server, Kinase- Phos ...with the protein sequence profile and protein coupling pattern, which is a novel feature ... See full document
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ProteMiner-SSM: a web server for efficient analysis of similar protein tertiary substructures.
... In the second experiment, ProteMiner-SSM is invoked to figure out whether some proteins in the Caspase family may contain a similar binding site to the structure of integrin reported in ...shows ... See full document
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SiMMap: a web server for inferring site-moiety map to recognize interaction preferences between protein pockets and compound moieties
... residues, the moiety composition of query com- pounds and pocket–moiety interaction type (electro- static, hydrogen bonding or van der ...of the site-moiety map on three targets, thymidine kinase, and ... See full document
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(PS)(2): protein structure prediction server version 3.0
... Figure 2. The features of the (PS) 2 web server: (A) Input: users can enter or upload protein sequences in FASTA ...view the predicted structure in 3D graphics ... See full document
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EuLoc: a web-server for accurately predict protein subcellular localization in eukaryotes by incorporating various features of sequence segments into the general form of Chou's PseAAC
... and the SVM method with sequence-based features and biological features. The SVM module overcomes the shortcoming of the homology search approach in predicting the subcellular ... See full document
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CPred: a web server for predicting viable circular permutations in proteins
... as the closeness (26) and the weighted contact number (37) have a high time complexity in computation and the random forest of CPred possesses many subpredictors, reducing the running time is ... See full document
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3D-partner: a web server to infer interacting partners and binding models
... ABSTRACT The 3D-partner is a web tool to predict interacting partners and binding models of a query protein sequence through structure complexes and a new scoring ...library. The ... See full document
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MoNetFamily: a web server to infer homologous modules and module-module interaction networks in vertebrates
... functions. The MoNetFamily web server can identify the modules, homologous modules (called module family) and MMI networks across multiple species for the query ...This server ... See full document
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(PS)(2)-v2: template-based protein structure prediction server
... automatic server for protein struc- ture predictions by applying numerous enhancements and modifications to the original technique, thereby improving the reliability and ...integrating ... See full document
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High Performance Web Server
... Simultaneously, the Web switch examines HTTP header and URL and compares to current content rules to select best server or cache to satisfy ...between the switch and the optimal ... See full document
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(PS)(2): protein structure prediction server
... ABSTRACT Protein structure prediction provides valuable insights into function, and comparative modeling is one of the most reliable methods to predict 3D struc- tures directly from amino acid ...during ... See full document
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The Design and Implementation of a Mobile Distributed Web Server System
... mobile server can monitor the status of mobile servers, including file ...Since web content is consisting of some related files, we can monitor these files to ensure ...deleting web content. ... See full document
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Realizing Cleint and Server Mobility for WEB Applications
... and server mobility. Suppose a user is booking the airline tickets for a family trip in the Labor day ...However, the user has to leave his desk for an important meeting while the ... See full document
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Writing a Report on a Web Server Program
... Give a general introduction to how the client/server model of web server & web browser works; or the concept of socket programming. Program analysis[r] ... See full document
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