[PDF] Top 20 On the relationship between the protein structure and protein dynamics
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On the relationship between the protein structure and protein dynamics
... as the protein fixed-point (PFP) model, is based on the positional vectors of atoms issuing from the fixed point, which is the point of the least fluc- tuations in ... See full document
10
On the relationship between the sequence conservation and the packing density profiles of the protein complexes
... to the prediction of the catalytic residues6 and ...compared the profiles of the weighted contact numbers and those of the rates of evolution of amino acid sites for a ... See full document
8
Relationship between protein structures and disulfide bonding patterns
... proteins and are known to play a key role in stabilizing protein struc- ...stabilize the folded states by increasing favorable enthalpy interactions in the folded states and by lowering ... See full document
5
On the packing density of the unbound protein-protein interaction interface and its implications in dynamics
... Characterizing the interface residues will help shed light on protein-protein interactions, which are involved in many important biological ...focus on characterizing sequence or ... See full document
8
Relationship between serum retinol-binding protein 4 and visfatin and the metabolic syndrome
... investigates the relationship between serum concentration of RBP4 and visfatin and the metabolic ...studied between October, 2004 and September, ...40 and ... See full document
3
Relationship between serum retinol-binding protein 4 and visfatin and the metabolic syndrome
... syndrome and subjects with four compo- nents except hyperglycemia had similar serum RBP4 ...though the constellation of metabolic risk factors is strongly associated with type 2 diabetes mellitus or ... See full document
6
Relationship between local structural entropy and protein thermostability
... of the results, we found that, for the sequences displaying the best linear relationship be- tween ␣ and ⌬T m , the mutated residues usually result in more hydrophobic packing ... See full document
8
Protein structure search and local structure characterization
... adopt the two-level approach that first trains the SOM then performs clustering on the trained SOM after determining the alphabet size [28], we applied the k- means algorithm to ... See full document
17
The study of serological relationship in the nonstructural NSs protein of the genus Tospovirus
... system and used as immungens for preparation of antisera, RAs-INSs and RAs-PNSs, ...with the homologous INSV antigen and the crude samples from the members of TSWV serogroup, ... See full document
1
Computation of conformational entropy from protein sequences using the machine-learning method - Application to the study of the relationship between structural conservation and local structural stability
... contexts. The conformations of subsequences are determined by the interplay between local and nonlocal interac- ...in the understanding of the sequence–structure relation- ... See full document
8
Membrane dipole potential of interaction between amyloid protein and phospholipid membranes is dependent on protein aggregation state
... Secondary structure as analyzed via circular dichroism The CD absorption spectroscopy was undertaken to chara- cterize the secondary structure information of protein species formed ... See full document
8
POINT: a database for the prediction of protein–protein interactions based on the orthologous interactome
... OF THE DATABASE POINT has been designed to predict protein–protein interac- tion networks that are evolutionarily conserved from mouse, fruit fly, worm and yeast and then to ... See full document
4
Molecular dynamics simulation of the enhancement of cobra cardiotoxin and E6 protein binding on mixed self-assembled monolayer molecules
... data. The data collection was 500 ps for E6 protein for each simulation, and 300 ps for ...CTX. The binding energy is computed from the non-bonded interactions between the ... See full document
7
Probing the DNA kink structure induced by the hyperthermophilic chromosomal protein Sac7d
... at the intercalation site, but different away from the binding site due to crystal ...to the minor groove of the DNA duplex and produce different kinks in ...in the DNA duplexes ... See full document
9
Protein structure database search and evolutionary classification
... is the key component of a protein align- ment ...mathematical structure is used to construct these matrices ...mathematical structure to a structural pairing database consis- ting of 207 492 ... See full document
14
Studies on the Relationships between the Protein Composition of Wheat Flours and the Qualities of Oil-Fried Gluten Balls 熊保榮、張基郁
... proximate and protein compositions, alveographic dough properties, and the quality of oil-fried gluten balls made from these flours were analyzed to investigate the effects of proximate ... See full document
1
Effects of melatonin on the nitric oxide system and protein nitration in the hypobaric hypoxic rat hippocampus
... Discussion The current study provides the information concerning the melatonin may attenuate HBH induced expression of the nitric oxide system and protein nitration in the ... See full document
27
Improving protein secondary structure prediction based on short subsequences with local structure similarity
... In the Methods section, we define synonymous words, and describe the method used to construct the protein- dependent synonymous ...discuss the SymPred algorithm and ... See full document
14
Examining the relationship between global and domain measures of quality of life by three factor structure models
... Cobalt complexes of o-benzoquinonediimine are complicated because of the presence of three possible oxidation states (I, II, III) and various coordination geometries[r] ... See full document
3
Local Refinement Algorithms for Protein Structure Comparison and Alignment
... organisms. Protein structures are essential for correct function because it al- lows molecular ...Thus protein structures provide the opportunity to recognize homology that is undetectable by ... See full document
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