[PDF] Top 20 Local Refinement Algorithms for Protein Structure Comparison and Alignment
Has 10000 "Local Refinement Algorithms for Protein Structure Comparison and Alignment" found on our website. Below are the top 20 most common "Local Refinement Algorithms for Protein Structure Comparison and Alignment".
Local Refinement Algorithms for Protein Structure Comparison and Alignment
... Segment Alignment Comparing to the more sophisticated methods like CE or VAST, the main-vector initialization position does have the advantage of saving valuable processor computation ...rough and not being ... See full document
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Mining Conserved Local Structure from Functional Hierarchical Classification via Local Structure Comparison
... 3.1: LOCAL STRUCTURE GENERATION via PAIRWISE LOCAL STRUCTURE COMPARISON In the first step, we approach a pair-wise protein structure comparison instead of multiple ... See full document
7
A Study on Tools and Algorithms for 3-D Protein Structures Alignment and Comparison
... measurement and algorithm for pairwise align- ment of protein ...given structure, and then describe an algorithm in calculating the ...one structure, and align it to the ... See full document
6
Protein structure search and local structure characterization
... Automatic substitution matrix training The substitution matrix used to align proteins represented by structural alphabets affects the alignment accuracy. The matrix is a crucial factor in the success of applying a ... See full document
17
Tools and Algorithms for Protein Structures Comparison with Various Initial Con¯gurations
... distance and angle between the corre- sponding pairs of secondary structure elements from the two proteins are within some ...secondary structure elements that have the same type, relative ... See full document
12
Local Diagnosis Algorithms for Multiprocessor Systems Under the Comparison Diagnosis Model
... important for a multi- processor ...neighbors, and then com- paring their responses. Sengupta and Dahbura proposed a polyno- mial-time algorithm with time complexity to diagnose a system with a total ... See full document
11
A Novel Feature with Dynamic Time Warping and Least Squares Adjustment for Protein Structure Alignment
... problems and has been employed in a wide variety of areas, the outcome of protein structure alignment using its standard version may not be ...two local structures that should be ... See full document
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A novel feature with dynamic time warping and least squares adjustment for protein structure alignment
... 摘要: Protein structure alignment is of importance in protein ...global and local structure ...original protein structures. A hybrid approach combining dynamic time ... See full document
1
A tool for structure alignment of molecules
... continuous alignment paths are selectively extended or discarded thereby leading to a single optimal ...(local-global alignment) algorithm, where longest continuous sequence is first found, ... See full document
8
Iterative Refinement Techniques for Improving Constrained Feature Based Multiple Structure Superposition
... of protein tertiary structures are available, an efficient and effective tool for protein structural alignment becomes important for the detection and classification of ... See full document
6
Feature selection and combination criteria for improving accuracy in protein structure prediction
... analysis and design of algorithms, computa- tional molecular biology, parallel processing, and computer-aided ...tools for multiple sequence alignments and evolutionary trees by using ... See full document
11
Protein structure database search and evolutionary classification
... an alignment, thereby indicating the reliability of the ...E-value for fast structural database ...BLAST for protein sequence ...HSPs for analyzing the BLAST algorithm allows us to ... See full document
14
Parametric Searching Algorithms with Adaptive Strategy for Three Dimensional Protein Structures Alignments
... the algorithms which we proposed previous to improve the rmsd value be- tween protein structure pairings by finding better alignment ...package and the aver- age of improvement ratios ... See full document
11
Constrained Multiple Structure Feature Alignment (CMSFA)
... tertiary structure of proteins provides precious information on their biological ...efficient and accurate bioinformatics tool for protein comparison becomes an important research ... See full document
10
Efficient algorithms for regular expression constrained sequence alignment
... Efficient algorithms for regular expression constrained sequence alignment ✩ Yun-Sheng Chung a , Chin Lung Lu b , Chuan Yi Tang a, ∗ a Department of Computer Science, National Tsing Hua University, ... See full document
7
Improving protein secondary structure prediction based on short subsequences with local structure similarity
... Dict-60 and SynonymDict-90, which were compiled from much larger template ...if protein A and protein B are similar, say the two share 50% of sequence identity, then PSI-BLAST can find more ... See full document
14
Fast Local Alignment Methods
... to be the highest scoring pair of identical length segments chosen from 2 sequences.. (for DNA: Identities: +5; Mismatches: -4).[r] ... See full document
26
Tree-structure architecture and VLSI implementation for vector quantization algorithms
... 1/0 bandwidth, complicated hardware, and irregular da- t a flow, etc., most of the previous approaches change data sequence to alleviate these problems while sacrific- in[r] ... See full document
4
A comparison of block-matching algorithms for VLSI implementation
... This overlapped area data can be stored inside the internal (on-chip) buffer to reduce external memory accesses (bandwidth). Three types of internal buffers are under evaluation: i) type[r] ... See full document
12
Relationship between local structural entropy and protein thermostability
... that, for the sequences displaying the best linear relationship be- tween ␣ and ⌬T m , the mutated residues usually result in more hydrophobic packing 1,30 or conformational rigid- ...the protein’s ... See full document
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